Transcript 35982 | MetamORF

Transcript

ID CARD

MetamORF ID

35982

ENSMUST00000007012

Name

Sod2-201

Strand

Biotype

protein_coding

Start-end positions

13007839-13018119

CDS Start-stop positions

13008046-13015171

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:20656

Aliases

ENSMUSG00000006818,
MGI:98352, MnSOD, NCBI:20656,
OFF:Sod2, Sod-2, Sod2

Chr 17

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
37260	42	GTG ...	VGD ...	Ribo-seq	GTG	strong	19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
35981	33	TTG ...	LGL ...	Ribo-seq	TTG	strong	20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
954725	45	ATA ...	IHS ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, E14
1193388	72	AAG ...	KVA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
955639	81	ACG ...	TTM ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
37244	36	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	20	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
38461	54	ATG ...	MPL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Testis
379707	84	ATG ...	MEF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	Brain, Glioma, Liver, MEF, MESC
36334	75	ATG ...	MAR ...	Ribo-seq	ATG	strong	22	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
956253	51	ACG ...	TRR ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
954258	51	AGG ...	RLS ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
706061	36	TTG ...	LQE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, BMDC
381861	45	ATG ...	MVG ...	Ribo-seq	ATG	moderate	19	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
855232	288	GTG ...	VSG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
383378	30	GTG ...	VGA ...	Ribo-seq	GTG	moderate	15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
956829	33	ATA ...	ILI ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
384891	63	TTG ...	LPV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
36973	60	TTG ...	LTC ...	Ribo-seq	TTG	moderate	18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
37805	126	GTG ...	VPR ...	Ribo-seq	GTG	weak	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
387196	90	GTG ...	VSP ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, R1E
706900	132	TTG ...	LPS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
39420	123	GTG ...	VSG ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
955393	66	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream sORF	BMDC
383792	84	TTG ...	LRT ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Liver, R1E, Spleen_B_cell
38267	135	CTG ...	LWP ...	Ribo-seq	CTG	moderate	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
954320	57	ACG ...	TCG ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
954374	30	AGG ...	RSL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
384733	84	ATG ...	MLL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC
1004469	270	GTG ...	VSG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
385161	78	CTG ...	LKD ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain, E14
36919	90	GTG ...	VSL ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Liver, R1E, Spleen_B_cell, Testis
956593	81	ATA ...	IRS ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
380497	42	CTG ...	LGS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Downstream sORF	Brain
956258	39	AGG ...	RTH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
956675	276	GTG ...	VQV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14
36250	123	CTG ...	LWE ...	Ribo-seq	CTG		19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
388268	36	CTG ...	LCP ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, R1E, Spleen_B_cell
37503	54	CTG ...	LPA ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
36576	45	CTG ...	LRA ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
36168	57	TTG ...	LLP ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
380490	162	ATG ...	MRR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC
38140	90	TTG ...	LAS ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
384627	33	TTG ...	LEC ...	Ribo-seq	TTG	moderate	19	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
954837	51	ATG ...	MSF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	BMDC, Glioma, Liver, MEF, MESC
384605	66	ATG ...	MGA ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
955331	60	GTG ...	VVE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
384937	69	CTG ...	LMG ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, R1E, Spleen_B_cell
37717	39	GTG ...	VTL ...	Ribo-seq	GTG	moderate	20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
39194	111	GTG ...	VQH ...	Ribo-seq	GTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5

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