Transcript 95130 | MetamORF

Transcript

ID CARD

MetamORF ID

95130

ENSMUST00000147570

Name

Snrpb-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

130171787-130179403

CDS Start-stop positions

130176695-130179236

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:20638

Aliases

AL024368,
AU018828, ENSMUSG00000027404, MGI:98342,
NCBI:20638, OFF:Snrpb, SM-B,
SM11, SMB, SNRNP-B,
Snrpb

Chr 2

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
47150	36	CTG ...	LCD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, Liver
1214185	54	AAG ...	KHM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1207804	120	AAG ...	KRV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
412752	42	ATC ...	IRR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD Overlapping sORF Upstream	E14
47550	45	CTG ...	LAC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	B_cell, E14, Spleen_B_cell
49277	81	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
15454	99	CTG ...	LQD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, E14, Spleen_B_cell
46047	156	CTG ...	LAL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Spleen_B_cell
45319	132	CTG ...	LEL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, E14, Spleen_B_cell
965527	57	AAG ...	KRS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
49109	201	TTG ...	LKT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Spleen_B_cell
1214674	69	AAG ...	KQK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1211330	60	AGG ...	RPL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD Overlapping sORF Upstream	E14
1210158	63	AGG ...	RNS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
48859	150	TTG ...	LPE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Spleen_B_cell
1208621	147	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
412216	111	ATT ...	ISV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD Overlapping sORF Upstream	E14
45191	126	CTG ...	LLG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Spleen_B_cell
737529	51	GTG ...	VHP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Liver
15696	153	GTG ...	VGK ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, E14, Liver, Spleen_B_cell
47019	78	CTG ...	LAE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	B_cell, E14, Spleen_B_cell
48234	102	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, MEF
44816	192	CTG ...	LSI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Spleen_B_cell
47900	42	CTG ...	LGQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
1209108	138	AAG ...	KML ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
15888	132	CTG ...	LQH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, Liver, Spleen_B_cell
48128	78	CTG ...	LVF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Spleen_B_cell
47886	99	CTG ...	LLA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Spleen_B_cell
43891	69	CTG ...	LAT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD Overlapping sORF Upstream	B_cell, Brain, E14, Liver, Spleen_B_cell
47316	105	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, E14
44265	123	CTG ...	LGG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Spleen_B_cell
16081	42	TTG ...	LIL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, E14, Liver, Spleen_B_cell
1207232	279	ATT ...	ILQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14
47418	54	CTG ...	LWQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD Overlapping sORF Upstream	B_cell, Brain, Liver, Spleen_B_cell
46137	135	TTG ...	LLE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Spleen_B_cell
49061	96	CTG ...	LAE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, E14, Spleen_B_cell
46857	216	ATG ...	MYL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Spleen_B_cell
1208657	129	AGG ...	REE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1213971	108	AGG ...	RCI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
49224	75	GTG ...	VFL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, Spleen_B_cell
44043	42	TTG ...	LVW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, MEF, Spleen_B_cell
102822	45	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell
45939	120	CTG ...	LAC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	B_cell, E14, Spleen_B_cell
46440	99	TTG ...	LLR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Liver
1208916	75	AGG ...	RGE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
99655	54	CTG ...	LQD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Spleen_B_cell
1213731	144	AGG ...	RHR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Downstream NMD sORF	E14

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