Transcript 424733

Transcript

ID CARD

MetamORF ID

424733

ENSMUST00000210514

Name

Snrnp70-207

Strand

Biotype

protein_coding

Start-end positions

45376459-45383885

CDS Start-stop positions

45376649-

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:20637

Aliases

2700022N21Rik,
3200002N22Rik, AI325098, ENSMUSG00000063511,
MGI:98341, NCBI:20637, OFF:Snrnp70,
R74807, Rnu1p70, Rnulp70,
Snrnp70, Snrp70, Srnp70,
U1-70, U1-70K

Chr 7

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
426950	261	CTG ...	LTR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF, Spleen_B_cell
426642	144	CTG ...	LFP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
426140	273	ATG ...	MEP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	MEF, Spleen_B_cell
235222	78	GTG ...	VVM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Spleen_B_cell
233377	72	ATG ...	MPS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Spleen_B_cell
232429	51	ATG ...	MNE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Spleen_B_cell
229930	90	CTG ...	LEN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Spleen_B_cell
231745	57	ATG ...	MSM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Spleen_B_cell
591167	39	GTG ...	VVM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	3T3
426485	213	CTG ...	LGN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF, Spleen_B_cell
592630	36	GTG ...	VMG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	3T3
597833	33	ATG ...	MGT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	3T3

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