Transcript 585393

Transcript

ID CARD

MetamORF ID

585393

ENSMUST00000166136

Name

Snd1-205

Strand

Biotype

processed_transcript

Start-end positions

28848907-28880308

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:56463

Aliases

AL033314,
ENSMUSG00000001424, MGI:1929266, NCBI:56463,
OFF:Snd1, Snd1, Tudor-SN

Chr 6

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1021881	276	GTG ...	VEV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
910031	204	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
906992	117	AGG ...	RST ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
907169	129	AAG ...	KRC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
586956	165	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
907760	162	ATG ...	MGL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
909533	51	CTG ...	LCW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
910040	69	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
908141	60	AAG ...	KLP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1022537	225	CTG ...	LHM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
1244294	42	AGG ...	RRR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
586146	240	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
908664	198	ATA ...	IRL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
908653	135	AAG ...	KPL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1247838	78	AGG ...	RSG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
577016	192	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
908936	147	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
909876	69	CTG ...	LWR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
585392	207	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1242996	60	AGG ...	RSC ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
908311	189	GTG ...	VEQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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