Transcript 2711 | MetamORF

Transcript

ID CARD

MetamORF ID

2711

ENSMUST00000001460

Name

Snd1-201

Strand

Biotype

protein_coding

Start-end positions

28480348-28888832

CDS Start-stop positions

28480565-28888300

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:56463

Aliases

AL033314,
ENSMUSG00000001424, MGI:1929266, NCBI:56463,
OFF:Snd1, Snd1, Tudor-SN

Chr 6

ORFs

119 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
528017	156	GTG ...	VPA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
909433	48	AAG ...	KPQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
525313	87	GTG ...	VRL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil, Spleen_B_cell
909068	36	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
2936	66	CTG ...	LEI ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
528384	63	CTG ...	LWT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1670609	117	CTG ...	LPS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
907760	162	ATG ...	MGL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
586956	165	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
529679	141	GTG ...	VYC ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
910355	102	ATC ...	IHP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
203977	39	ATG ...	MTT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
910438	189	AAG ...	KRC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
906611	222	AGG ...	RRA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
586415	30	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
579416	36	GTG ...	VPN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1688248	66	CTG ...	LPQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
200551	132	GTG ...	VKR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
526337	42	CTG ...	LPK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell, v6-5
208029	72	ATG ...	MTS ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, BMDC, Glioma, Liver, MEF, MESC
587179	222	ATG ...	MGL ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC, v6-5
528736	63	GTG ...	VYC ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC, Spleen_B_cell, v6-5
529563	126	CTG ...	LGI ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell, v6-5
908930	102	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
909876	69	CTG ...	LWR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
530309	72	CTG ...	LFH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, NSC, Spleen_B_cell
205049	57	TTG ...	LPA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
194086	66	ATG ...	MFR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Neutrophil, NSC, Spleen_B_cell, v6-5
585624	54	TTG ...	LRP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1516272	33	ATG ...	MPR ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
909366	156	AGG ...	RNK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
208926	135	CTG ...	LQK ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, v6-5
906756	54	ATG ...	MSL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
587457	150	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
527447	132	TTG ...	LSE ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
908752	213	ATT ...	IQR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
586146	240	TTG ...	LAG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, v6-5
575333	45	ATG ...	MRG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
586595	171	TTG ...	LSE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
528672	66	ATG ...	MTS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
210188	57	CTG ...	LLI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
585392	207	CTG ...	LSC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, MEF
526702	57	ATG ...	MCL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1669944	81	ATG ...	MRS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
529962	156	CTG ...	LPS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, Spleen_B_cell, v6-5
525765	45	CTG ...	LLI ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
525018	123	CTG ...	LPP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
191623	138	ATG ...	MGV ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
586454	138	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, NSC
209081	168	CTG ...	LET ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
208881	90	ATG ...	MFR ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, v6-5
210271	93	CTG ...	LWT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
526385	30	ATG ...	MSS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell, v6-5
909533	51	CTG ...	LCW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
200100	66	ATG ...	MAK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1096809	216	CTG ...	LHC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
910480	204	ATT ...	ICR ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
910249	36	ATC ...	IRT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
209980	267	ATG ...	MFE ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, v6-5
201049	99	CTG ...	LRG ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1242977	39	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
908932	75	ATT ...	ILE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
205198	51	CTG ...	LVN ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell, v6-5
208031	273	TTG ...	LSM ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, v6-5
910755	258	ATA ...	IRL ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
582729	120	GTG ...	VRA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
907824	39	ATT ...	IWT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
578679	72	CTG ...	LSS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil
911207	126	AAG ...	KPQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
2713	42	CTG ...	LPH ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, Skin_tumor, Spleen_B_cell, v6-5
201331	60	CTG ...	LCG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell, v6-5
910727	228	AAG ...	KCM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
576675	102	CTG ...	LPF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
910614	171	ATT ...	ILE ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1094501	135	CTG ...	LWT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
209417	216	TTG ...	LSP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, v6-5
525838	30	CTG ...	LPH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Spleen_B_cell, v6-5
1249116	99	ATA ...	IRT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
907806	264	ATG ...	MSQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
71549	294	GTG ...	VNT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	CDS sORF	Neutrophil, R1E, Testis
530692	114	ATG ...	MPS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
907963	72	ATT ...	IYL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
197502	93	TTG ...	LNV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
910863	60	ATC ...	IRT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
577131	48	TTG ...	LRP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, v6-5
587447	162	CTG ...	LSA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
209210	69	ATG ...	MCL ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
199701	69	CTG ...	LFH ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
209913	252	GTG ...	VWS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, v6-5
585586	252	CTG ...	LAT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, v6-5
205350	123	CTG ...	LGI ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
201337	111	CTG ...	LQK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
587014	153	GTG ...	VPT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1246771	93	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
3511	105	CTG ...	LEI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Skin_tumor
193899	72	CTG ...	LET ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell
196402	30	ATG ...	MER ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1096408	189	ATG ...	MVP ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, v6-5
585806	96	TTG ...	LPV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
910654	177	AGG ...	RST ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
207864	156	GTG ...	VKR ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, v6-5
529472	234	CTG ...	LPK ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, Spleen_B_cell, v6-5
577016	192	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
529450	222	ATG ...	MSS ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
1667644	39	TTG ...	LQI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
2710	57	TTG ...	LPV ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
584684	129	CTG ...	LLR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1670765	126	CTG ...	LRK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
908235	255	AGG ...	RST ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
528367	81	CTG ...	LAL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil, Spleen_B_cell
207064	162	ATG ...	MGV ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, v6-5
527649	78	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell, v6-5
1248930	99	ATC ...	ILP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
908621	90	CTG ...	LPF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
192771	111	GTG ...	VVL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
582165	180	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
209570	48	CTG ...	LPF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, v6-5
526456	66	ATG ...	MLW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
906641	63	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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