Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

1473

ID

ENSMUST00000150574

Name

Smu1-204

Strand

-

Biotype

processed_transcript

Start-end positions

40754376-40757831

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

GTG ...

Gene

ID

NCBI:74255

Aliases

2600001O03Rik,
2610203K23Rik, AB044414, AI845086,
AW556129, Bwd, ENSMUSG00000028409,
MGI:1915546, NCBI:74255, OFF:Smu1,
Smu1


Chr 4

ORFs

23 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

58232 132

GTG ...

VDS ...

Ribo-seq
GTG 12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, R1E, v6-5
60829 264

GTG ...

VAD ...

Ribo-seq
GTG 15 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
154959 69

TTG ...

LKV ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
58725 117

CTG ...

LRQ ...

Ribo-seq
CTG weak 7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
R1E
60688 294

CTG ...

LNT ...

Ribo-seq
CTG 16 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
57510 225

GTG ...

VIR ...

Ribo-seq
GTG 14 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
v6-5
154141 60

TTG ...

LGY ...

Ribo-seq
TTG moderate 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, R1E, v6-5
57833 138

TTG ...

LGA ...

Ribo-seq
TTG strong 9 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, R1E, v6-5
56687 141

CTG ...

LNT ...

Ribo-seq
CTG 12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, R1E, v6-5
57580 57

CTG ...

LEN ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
56657 81

CTG ...

LWT ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, Spleen_B_cell
56059 162

TTG ...

LEL ...

Ribo-seq
TTG strong 9 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, R1E, v6-5
57389 57

CTG ...

LKL ...

Ribo-seq
CTG 12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, Testis, v6-5
1509426 165

ATG ...

MAT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
MEF
60977 285

GTG ...

VDS ...

Ribo-seq
GTG 16 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
57980 201

TTG ...

LKE ...

Ribo-seq
TTG 12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, R1E, v6-5
58098 51

TTG ...

LPD ...

Ribo-seq
TTG 13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, NSC,
R1E, Testis, v6-5
1472 204

TTG ...

LPD ...

Ribo-seq
TTG 16 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
1563 210

CTG ...

LKL ...

Ribo-seq
CTG 16 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
58530 156

TTG ...

LIE ...

Ribo-seq
TTG moderate 9 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, R1E, v6-5
56589 111

GTG ...

VAD ...

Ribo-seq
GTG 12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, R1E, v6-5
59358 174

CTG ...

LAT ...

Ribo-seq
CTG 13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
Liver, MEF, Neutrophil,
NSC, R1E, v6-5
1654735 180

GTG ...

VIR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    ncRNA
    sORF
MEF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5