Transcript 42744 | MetamORF

Transcript

ID CARD

MetamORF ID

42744

ENSMUST00000025930

Name

Smc3-201

Strand

Biotype

protein_coding

Start-end positions

53600398-53645833

CDS Start-stop positions

53600540-53644778

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

NCBI:13006

Aliases

Bamacan,
Cspg6, ENSMUSG00000024974, HCAP,
MGI:1339795, Mmip1, NCBI:13006,
OFF:Smc3, SMC-3, Smc3,
SmcD

Chr 19

ORFs

108 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1200939	87	ATA ...	IRK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1203379	120	AGG ...	REA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1365097	90	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
727483	186	GTG ...	VMN ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC, R1E, v6-5
719275	48	GTG ...	VKF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1500190	51	CTG ...	LFL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1160149	96	GTG ...	VNQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
725902	99	GTG ...	VSG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
1204857	135	AAG ...	KKK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1363853	51	ATG ...	MKS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
1050994	30	ATG ...	MLW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1158318	102	TTG ...	LER ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E, v6-5
1633163	33	ATG ...	MMN ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1203101	96	ACG ...	TKE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1204706	114	AAG ...	KGV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1204057	36	AAG ...	KSK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1365439	87	CTG ...	LGF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
402406	63	TTG ...	LFS ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1202126	39	AGG ...	RQI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
725116	90	TTG ...	LTI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC, R1E, v6-5
1202527	39	AGG ...	RLQ ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1546005	60	ATG ...	MPS ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
727012	108	GTG ...	VAR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, v6-5
1204719	153	ATA ...	IRK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1202198	42	AGG ...	RQV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
725772	108	GTG ...	VLK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF
727094	111	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC, R1E, v6-5
725437	105	CTG ...	LKD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, v6-5
1363177	51	CTG ...	LGF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
490114	72	ATG ...	MQH ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
489599	81	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1363338	60	TTG ...	LKV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
403417	51	ATG ...	MNS ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1050606	45	GTG ...	VFH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, NSC, v6-5
727542	105	TTG ...	LWK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC, R1E, v6-5
488312	72	GTG ...	VSG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1160235	63	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1201776	135	ATC ...	IPD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
488857	48	CTG ...	LVL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
1636372	72	CTG ...	LSE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1201638	117	AAG ...	KKK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1159993	60	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
42743	69	CTG ...	LLF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, Testis
487701	63	CTG ...	LLK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell, v6-5
1205179	105	AAG ...	KRR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
806648	69	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
1160794	72	GTG ...	VFH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1364894	96	TTG ...	LKV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
726859	147	ATG ...	MWR ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, v6-5
718828	45	TTG ...	LWK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
1204789	153	AAG ...	KEM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1205164	123	ACG ...	TKE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
491525	39	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Spleen_B_cell
1201350	30	ATC ...	INH ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1203309	102	ATC ...	IRQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1160738	102	TTG ...	LSV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1201624	111	AAG ...	KNS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1205452	168	ATC ...	IRQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1633139	42	GTG ...	VER ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1204460	126	AAG ...	KKK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1202454	87	AAG ...	KSR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1159874	60	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
726602	135	CTG ...	LLF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF
719786	99	GTG ...	VLK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, v6-5
1160632	75	GTG ...	VWK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1201755	48	AGG ...	RCS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
807223	90	ATG ...	MQN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E, v6-5
1205409	96	AAG ...	KSR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1158206	126	TTG ...	LTK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
1204822	39	AGT ...	SCF ...	Ribo-seq	AGT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1158632	45	TTG ...	LRR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1157967	33	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1499801	57	GTG ...	VVL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1363469	54	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
718920	51	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
488320	42	CTG ...	LLS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, NSC, Spleen_B_cell, v6-5
489217	66	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell, v6-5
725451	120	GTG ...	VLF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC, R1E, v6-5
807231	72	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
43099	72	TTG ...	LLL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, Testis
724281	96	CTG ...	LKD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, v6-5
726944	87	CTG ...	LGH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
489457	84	ATG ...	MQN ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E, Spleen_B_cell, v6-5
490454	36	ATG ...	MPS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
1204134	51	AAG ...	KFH ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1545885	51	TTG ...	LRR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
726275	195	TTG ...	LFS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC, R1E, v6-5
1203087	54	ATT ...	IWR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1202965	48	AGG ...	RRR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
724109	60	GTG ...	VLF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
720016	120	ATG ...	MWR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
718420	90	ATG ...	MIR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF
1205322	60	AGA ...	RYD ...	Ribo-seq	AGA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
725787	114	TTG ...	LRG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Neutrophil
1201000	45	CTG ...	LEK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
401744	54	GTG ...	VMN ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
490480	30	ATG ...	MNG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
1204448	120	AAG ...	KNS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
489796	39	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Spleen_B_cell
726081	138	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF
1202837	36	AGG ...	RHY ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
726872	156	ATG ...	MIR ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC
1050085	60	CTG ...	LGH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, NSC
1160032	183	ATG ...	MNS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, R1E, v6-5
1157808	108	ATG ...	MYL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
1157602	114	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1205367	57	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
719258	63	TTG ...	LIK ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, NSC, R1E, v6-5

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