Transcript 343720

Transcript

ID CARD

MetamORF ID

343720

ENSMUST00000139075

Name

Slmap-212

Strand

Biotype

protein_coding

Start-end positions

26414296-26534895

CDS Start-stop positions

26414896-26533525

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:83997

Aliases

D330001L02Rik,
ENSMUSG00000021870, MGI:1933549, Miranda,
mKIAA1601, NCBI:83997, OFF:Slmap,
Slap, Slmap

Chr 14

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
349567	141	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
352089	180	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
29555	30	ATG ...	MAA ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, E14, Liver, MEF
346892	162	ATG ...	MFE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14
350798	48	ATG ...	MGL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF Upstream	E14
1309020	30	AAG ...	KFP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
343719	186	ATG ...	MLQ ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF Upstream	Brain, E14, MEF
348553	207	CTG ...	LRE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
348530	183	CTG ...	LQC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
348697	87	CTG ...	LYF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
350882	198	CTG ...	LSS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14
346344	102	TTG ...	LVK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
786297	33	TTG ...	LSL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF Upstream	B_cell, E14

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