Transcript 29556 | MetamORF

Transcript

ID CARD

MetamORF ID

29556

ENSMUST00000102956

Name

Slmap-203

Strand

Biotype

protein_coding

Start-end positions

26413168-26534931

CDS Start-stop positions

26416209-26533525

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:83997

Aliases

D330001L02Rik,
ENSMUSG00000021870, MGI:1933549, Miranda,
mKIAA1601, NCBI:83997, OFF:Slmap,
Slap, Slmap

Chr 14

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1140854	39	TTG ...	LGT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	v6-5
344464	237	GTG ...	VCD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
346364	51	GTG ...	VMG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
676703	36	TTG ...	LNS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
675642	36	CTG ...	LAC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
344456	66	TTG ...	LIA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
349769	240	CTG ...	LVC ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
349073	231	TTG ...	LSP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
30392	66	CTG ...	LKT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
344486	108	GTG ...	VTH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
348439	51	TTG ...	LSS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
352089	180	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
677984	42	TTG ...	LQS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
352077	114	ATG ...	MPP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
349368	75	ATG ...	MPP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
1000139	51	CTG ...	LRE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
350882	198	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
346318	300	CTG ...	LHR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
346344	102	TTG ...	LVK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
346892	162	ATG ...	MFE ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, v6-5
350798	48	ATG ...	MGL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
353413	105	TTG ...	LIA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
348843	39	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
349782	129	CTG ...	LKA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, v6-5
344573	93	GTG ...	VPL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, v6-5
353671	78	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
29555	30	ATG ...	MAA ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
349567	141	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
678006	54	TTG ...	LHC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
348697	87	CTG ...	LYF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
30463	57	ATG ...	MAA ...	Ribo-seq	ATG		13	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5

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