Transcript 8035 | MetamORF

Transcript

ID CARD

MetamORF ID

8035

ENSMUST00000021077

Name

Slc9a3r1-201

Strand

Biotype

protein_coding

Start-end positions

115163341-115181181

CDS Start-stop positions

115163526-115180509

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:26941

Aliases

EBP-50,
ENSMUSG00000020733, MGI:1349482, NCBI:26941,
NHE-RF, NHERF-1, NHERF1,
OFF:Slc9a3r1, Slc9a3r1

Chr 11

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
450281	39	GTG ...	VQS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Spleen_B_cell
933351	63	ATG ...	MAT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC
933827	117	ACG ...	TQR ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
451869	168	TTG ...	LAG ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, Neutrophil, Spleen_B_cell
448011	57	CTG ...	LHG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, NSC, Spleen_B_cell
456179	48	GTG ...	VQS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Spleen_B_cell
933956	105	AGG ...	RPV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
889387	33	GTG ...	VEV ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, v6-5
446403	63	CTG ...	LCP ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Liver, MEF, Neutrophil, Spleen_B_cell
888639	87	ATG ...	MVS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, v6-5
1294083	171	ACG ...	TSV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
319446	72	ATG ...	MRL ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell
317603	210	ATG ...	MAM ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
304356	120	CTG ...	LFP ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
8034	123	ATG ...	MAM ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, Neutrophil, Skin_tumor, Spleen_B_cell
315522	66	CTG ...	LGT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, Neutrophil, Spleen_B_cell
297162	39	CTG ...	LGT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, Neutrophil, Spleen_B_cell
889816	84	GTG ...	VKP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver
299934	99	GTG ...	VLS ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
455838	84	GTG ...	VKP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, Spleen_B_cell
932227	36	ACG ...	TAP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
317854	204	ATG ...	MAS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, Spleen_B_cell
642176	36	CTG ...	LSP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, Neutrophil
295806	36	CTG ...	LDS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, Spleen_B_cell
9012	117	ATG ...	MAS ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, Skin_tumor, Spleen_B_cell
454020	54	GTG ...	VRC ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Spleen_B_cell
890895	30	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
18669	54	GTG ...	VSP ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
888171	57	CTG ...	LAR ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, v6-5
888385	30	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
991844	150	CTG ...	LPG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, v6-5
448568	102	CTG ...	LCV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil, Spleen_B_cell
891339	126	CTG ...	LSP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
309851	45	ATG ...	MRL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, Spleen_B_cell
934893	153	CTG ...	LLP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, v6-5
448266	150	GTG ...	VRS ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, MEF, Neutrophil, Spleen_B_cell
889544	84	GTG ...	VSA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, v6-5
313571	123	CTG ...	LDS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, Spleen_B_cell
1286713	144	ACG ...	TSV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
291842	111	GTG ...	VPR ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
645789	60	CTG ...	LHH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver

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