Transcript 518010

Transcript

ID CARD

MetamORF ID

518010

ENSMUST00000138596

Name

Slc7a1-203

Strand

Biotype

protein_coding

Start-end positions

148352153-148371546

CDS Start-stop positions

-148352435

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:11987

Aliases

4831426K01Rik,
AI447493, Atrc-1, Atrc1,
Cat1, ENSMUSG00000041313, mCAT-1,
MGI:88117, NCBI:11987, OFF:Slc7a1,
Rec-1, Rev-1, Slc7a1

Chr 5

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
520499	39	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	Spleen_B_cell
524593	222	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
523362	75	CTG ...	LLQ ...	Ribo-seq	CTG		9	sORFs_org_Mouse	sORF	3T3, B_cell, BMDC, MEF, R1E, Spleen_B_cell, v6-5
523502	243	CTG ...	LCD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
520081	48	CTG ...	LQP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
63492	51	GTG ...	VDS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	Spleen_B_cell
518009	102	CTG ...	LQK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
1805209	102	ATG ...	MLC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	R1E

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