Transcript 42047 | MetamORF

Transcript

ID CARD

MetamORF ID

42047

ENSMUST00000170157

Name

Slc3a2-202

Strand

Biotype

protein_coding

Start-end positions

8706882-8723369

CDS Start-stop positions

8707723-8723095

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:17254

Aliases

4F2,
4F2HC, AI314110, Cd98,
ENSMUSG00000010095, Ly-10, Ly-m10,
Ly10, Mdu1, MGI:96955,
Mgp-2hc, NACAE, NCBI:17254,
OFF:Slc3a2, Slc3a2

Chr 19

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
43676	126	ATG ...	MLI ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell, Testis
1457703	33	CTG ...	LAP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
43361	237	ATG ...	MPL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell, Testis
1157873	105	CTG ...	LGA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1457064	42	ATG ...	MKT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
490416	48	ATG ...	MHP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
43703	105	TTG ...	LSP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell, Testis
42164	177	CTG ...	LAG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Testis, v6-5
489443	120	GTG ...	VTS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
409598	114	CTG ...	LNL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
487562	72	GTG ...	VSC ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, NSC, R1E, v6-5
490733	30	GTG ...	VAE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
409416	105	CTG ...	LNT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
409247	45	TTG ...	LMS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
488646	93	CTG ...	LTS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
1457625	36	ATG ...	MRG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1158808	90	CTG ...	LGA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
42827	81	GTG ...	VVA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, R1E, Testis
401502	63	CTG ...	LSP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
488980	36	GTG ...	VPG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
487804	33	ATG ...	MVS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
490825	57	ATG ...	MSV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
490731	36	ATG ...	MPL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
489840	30	CTG ...	LSG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
43583	117	TTG ...	LPV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell, Testis
43672	231	CTG ...	LAA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell, Testis
490599	39	GTG ...	VWM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
1457373	54	CTG ...	LTC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
489410	63	CTG ...	LYR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, NSC, R1E
401555	72	TTG ...	LQG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
409714	42	ATG ...	MSR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
409020	33	TTG ...	LSA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
487478	156	GTG ...	VTF ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell
1457467	39	TTG ...	LST ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
725357	87	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
43487	123	TTG ...	LIL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell, Testis
487318	30	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
42046	78	GTG ...	VAQ ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, R1E, Testis, v6-5
488464	111	ATG ...	MHC ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell

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