Transcript 11535 | MetamORF

Transcript

ID CARD

MetamORF ID

11535

ENSMUST00000023099

Name

Slc38a2-201

Strand

Biotype

protein_coding

Start-end positions

96687394-96699698

CDS Start-stop positions

96690127-96698730

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:67760

Aliases

5033402L14Rik,
AI316867, ATA2, ENSMUSG00000022462,
MGI:1915010, mKIAA1382, NCBI:67760,
OFF:Slc38a2, SAT2, Slc38a2,
SNAT2

Chr 15

ORFs

87 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31280	57	GTG ...	VTI ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
11996	246	GTG ...	VSL ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
361449	84	TTG ...	LPR ...	Ribo-seq	TTG	weak	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
686574	114	CTG ...	LPV ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, E14, MEF, v6-5
421404	90	AAG ...	KKR ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, E14
359543	42	GTG ...	VTS ...	Ribo-seq	GTG	moderate	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, v6-5
421288	42	ATC ...	IGI ...	Ribo-seq	ATC	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, E14
366974	48	TTG ...	LGF ...	Ribo-seq	TTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
686370	75	GTG ...	VRR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Neutrophil
11918	267	CTG ...	LTT ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14, MEF, NSC, Skin_tumor, v6-5
1184851	66	ACG ...	TML ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1182579	60	ACG ...	TVT ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
32593	42	CTG ...	LVC ...	Ribo-seq	CTG	strong	19	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
11952	195	GTG ...	VLK ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
1184404	108	ATC ...	IPK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
421545	54	AAG ...	KDS ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	sORF Upstream	C2C12
421566	57	ATC ...	IHL ...	Ribo-seq	ATC	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14
470564	69	GTG ...	VTE ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
367127	84	TTG ...	LNQ ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
11994	165	GTG ...	VGP ...	Ribo-seq	GTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1142095	33	CTG ...	LYD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
361527	99	GTG ...	VSH ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, v6-5
362055	72	ATG ...	MRT ...	Ribo-seq	ATG	weak	20	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
683588	39	TTG ...	LLD ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF
1180246	81	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
11935	72	ATG ...	MRL ...	Ribo-seq	ATG		20	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5
1182766	30	AAG ...	KLL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
356080	105	TTG ...	LQE ...	Ribo-seq	TTG	moderate	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
687701	36	TTG ...	LDY ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF
472838	135	GTG ...	VFA ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
31324	45	TTG ...	LNQ ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Spleen_B_cell, Testis, v6-5
1182333	96	AGG ...	RKP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1182869	57	ATA ...	IAP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1181047	99	ATT ...	IFS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1180431	57	AAG ...	KRK ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
473678	63	ATG ...	MLA ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
11534	81	ATG ...	MPT ...	Ribo-seq	ATG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
948825	90	ATA ...	IPT ...	Ribo-seq	ATA	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
11948	177	GTG ...	VLS ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
363302	60	TTG ...	LGF ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
1180116	63	ATA ...	IKE ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
472588	120	GTG ...	VGQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, Spleen_B_cell
1181394	96	ACG ...	TAP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1183905	93	ACG ...	TDD ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1183029	30	ATC ...	IDN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1537771	93	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
32086	48	TTG ...	LSD ...	Ribo-seq	TTG	weak	17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
949505	75	ATT ...	IKE ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
688537	48	GTG ...	VIA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF
366529	120	ATG ...	MPT ...	Ribo-seq	ATG		17	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
11728	144	GTG ...	VFS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, MEF, Skin_tumor
358656	78	CTG ...	LAP ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, v6-5
1181264	45	ACG ...	TML ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
471494	42	ATG ...	MLA ...	Ribo-seq	ATG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
472707	156	GTG ...	VTE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, Spleen_B_cell
11627	66	CTG ...	LTF ...	Ribo-seq	CTG	moderate	19	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
30803	39	GTG ...	VCD ...	Ribo-seq	GTG	weak	17	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1183438	66	ATA ...	ILG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
360720	48	ATG ...	MPW ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, v6-5
364091	66	TTG ...	LWA ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1180369	39	AAG ...	KSS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
362916	42	TTG ...	LSA ...	Ribo-seq	TTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
1183666	69	ATC ...	IPK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
472689	57	GTG ...	VES ...	Ribo-seq	GTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
473485	165	GTG ...	VRW ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1144646	33	CTG ...	LEL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1182958	45	ACG ...	TNS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
421488	45	ATC ...	IAI ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	sORF Upstream	C2C12
471243	33	GTG ...	VGQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Liver, Spleen_B_cell, v6-5
688448	42	CTG ...	LLL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, MEF
471686	84	ATG ...	MRL ...	Ribo-seq	ATG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
1179909	36	ATT ...	IAA ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
359206	30	TTG ...	LSS ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, R1E, Spleen_B_cell, v6-5
1184466	180	ACG ...	TGD ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
365203	36	ATG ...	MPW ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
12043	261	ATG ...	MQR ...	Ribo-seq	ATG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
32511	72	CTG ...	LLH ...	Ribo-seq	CTG	weak	18	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1180208	33	ATC ...	IPL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
31965	51	TTG ...	LLS ...	Ribo-seq	TTG	weak	15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
361704	36	CTG ...	LCW ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, v6-5
791258	174	TTG ...	LGY ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF
356513	78	TTG ...	LWA ...	Ribo-seq	TTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
470591	69	GTG ...	VES ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
472757	183	TTG ...	LFP ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
690808	60	TTG ...	LSP ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, v6-5
1181796	69	AGG ...	RTA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
691243	30	TTG ...	LGL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, v6-5

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