Transcript 422642

Transcript

ID CARD

MetamORF ID

422642

ENSMUST00000163246

Name

Slc25a3-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

91116791-91123957

CDS Start-stop positions

91122171-91123702

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:18674

Aliases

5730556H19Rik,
ENSMUSG00000061904, MGI:1353498, NCBI:18674,
OFF:Slc25a3, Phc, PTP,
Slc25a3

Chr 10

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
263195	48	TTG ...	LSF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD sORF	MEF, NSC
214492	72	TTG ...	LKL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
76793	129	TTG ...	LWA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
59394	159	CTG ...	LYL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
278667	57	CTG ...	LES ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, Spleen_B_cell, v6-5
63742	51	TTG ...	LRE ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
842757	33	GTG ...	VNV ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Neutrophil, NSC, v6-5
919504	258	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain
514045	30	CTG ...	LKK ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, Spleen_B_cell, v6-5
221898	45	GTG ...	VRS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, Spleen_B_cell, v6-5
915776	69	AGG ...	RLP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
175286	48	GTG ...	VDE ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14, MEF, v6-5
882532	99	TTG ...	LAI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, NSC
81133	147	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
1581540	96	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
223382	84	TTG ...	LNV ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
437281	159	GTG ...	VWK ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, MEF, Neutrophil, Spleen_B_cell, v6-5
1512856	54	TTG ...	LTF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	NSC
429936	84	GTG ...	VKV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, Spleen_B_cell, v6-5
928575	96	ATC ...	IYD ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
86690	126	TTG ...	LIG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Neutrophil, NSC
66276	111	CTG ...	LAP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
435565	30	ATG ...	MHC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell
902686	33	CTG ...	LFP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Downstream NMD sORF	E14, NSC, v6-5
57356	114	CTG ...	LTH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
1033846	225	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
185028	75	CTG ...	LLK ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
57855	153	GTG ...	VWL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
527244	117	CTG ...	LTA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, MEF, Neutrophil, Spleen_B_cell, v6-5
509007	54	TTG ...	LWF ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
61061	174	CTG ...	LWR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
57852	168	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD Overlapping sORF Upstream	Brain, Spleen_B_cell
5580	114	GTG ...	VEG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Spleen_B_cell, v6-5
422641	60	ATG ...	MKS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, NSC, Spleen_B_cell
159257	42	GTG ...	VAH ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, NSC, Spleen_B_cell, v6-5
1017382	219	CTG ...	LVH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain

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