Transcript 20777 | MetamORF

Transcript

ID CARD

MetamORF ID

20777

ENSMUST00000185429

Name

Sf3b1-202

Strand

Biotype

retained_intron

Start-end positions

54988953-54992541

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:81898

Aliases

155kDa,
2810001M05Rik, AA409119, ENSMUSG00000025982,
MGI:1932339, NCBI:81898, OFF:Sf3b1,
Prp10, SAP155, Sf3b1,
SF3b155, TA-8, Targ4

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1293921	270	ACG ...	TTV ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
23254	39	ATG ...	MLP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, Testis
1197473	279	AGG ...	RVC ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
7554	33	TTG ...	LYD ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF
29861	144	TTG ...	LFE ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Testis
1306414	288	AGG ...	RQN ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
29947	219	CTG ...	LPA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
42020	39	CTG ...	LKH ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Testis
948243	39	ATA ...	ISA ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
449818	30	CTG ...	LNL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
1295869	96	ACG ...	TPL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1193001	33	AGG ...	RKG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
20994	45	TTG ...	LSI ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Testis
475685	45	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
20776	177	GTG ...	VQN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
457942	45	ATG ...	MNT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
27113	42	TTG ...	LLK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, Testis
1294992	39	AAG ...	KFR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1299157	252	ATT ...	IVA ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1283112	108	ATC ...	IYA ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1193059	258	ATA ...	IAI ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Intronic sORF	E14
34515	165	GTG ...	VLK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Testis

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