Transcript 23584 | MetamORF

Transcript

ID CARD

MetamORF ID

23584

ENSMUST00000168776

Name

Sept2-214

Strand

Biotype

protein_coding

Start-end positions

93479061-93509733

CDS Start-stop positions

93489146-93507064

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:18000

Aliases

AW208991,
ENSMUSG00000026276, ENSMUSG00000116048, MGI:97298,
mKIAA0158, NCBI:18000, Nedd-5,
Nedd5, OFF:Septin2, Sept2,
Septin2

Chr 1

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
458468	33	TTG ...	LNA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
42925	129	TTG ...	LKS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell, Testis
25959	102	TTG ...	LQE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Testis
460587	39	TTG ...	LQI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
52303	75	ATG ...	MKT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell, Testis
499241	114	TTG ...	LQE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
204535	45	ATG ...	MKM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell
97215	39	ATG ...	MKT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
446948	54	CTG ...	LAM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
389164	60	CTG ...	LMQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell
172132	54	TTG ...	LKP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell
48279	135	ATG ...	MKL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell, Testis
50372	81	ATG ...	MKM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell, Testis
449449	39	TTG ...	LCL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
12102	45	TTG ...	LMS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
49044	57	TTG ...	LIT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Testis
183558	57	ATG ...	MQS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell
463502	33	CTG ...	LSL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
130299	81	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
23583	63	GTG ...	VVT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Spleen_B_cell, Testis
36405	60	GTG ...	VTV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Spleen_B_cell, Testis
10058	42	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
128823	78	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell
53062	96	CTG ...	LMQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell, Testis
458704	45	TTG ...	LDL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
336704	39	ATG ...	MGC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell
303062	99	ATG ...	MKL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell
170868	93	TTG ...	LKS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell
411085	48	ATG ...	MLD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
53813	93	ATG ...	MQS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell, Testis
457771	54	GTG ...	VTA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Spleen_B_cell

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