Transcript 112614

Transcript

ID CARD

MetamORF ID

112614

ENSMUST00000027495

Name

Sept2-201

Strand

Biotype

protein_coding

Start-end positions

93478964-93510260

CDS Start-stop positions

93489146-93507064

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:18000

Aliases

AW208991,
ENSMUSG00000026276, ENSMUSG00000116048, MGI:97298,
mKIAA0158, NCBI:18000, Nedd-5,
Nedd5, OFF:Septin2, Sept2,
Septin2

Chr 1

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
10058	42	ATG ...	MSS ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC, R1E, v6-5
1625765	30	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
128823	78	TTG ...	LLL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, R1E, v6-5
12102	45	TTG ...	LMS ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, R1E, v6-5
812483	60	CTG ...	LGG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14
52303	75	ATG ...	MKT ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
449449	39	TTG ...	LCL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, R1E, v6-5
48279	135	ATG ...	MKL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
445836	60	CTG ...	LGG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF
25959	102	TTG ...	LQE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell
458468	33	TTG ...	LNA ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
130299	81	TTG ...	LLL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, R1E, v6-5
748961	72	GTG ...	VTV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
53813	93	ATG ...	MQS ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
750518	66	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
183558	57	ATG ...	MQS ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
172132	54	TTG ...	LKP ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, v6-5
34324	33	CTG ...	LTS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Liver, MEF, Neutrophil, NSC, v6-5
411085	48	ATG ...	MLD ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, R1E, v6-5
499241	114	TTG ...	LQE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF, Neutrophil, NSC, v6-5
42925	129	TTG ...	LKS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
115226	69	GTG ...	VLS ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
810708	33	CTG ...	LTS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Liver, MEF, Neutrophil, NSC, v6-5
460587	39	TTG ...	LQI ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, R1E, v6-5
39346	57	CTG ...	LIS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, R1E, v6-5
112613	114	ATG ...	MTP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, MEF, Neutrophil
50372	81	ATG ...	MKM ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
389164	60	CTG ...	LMQ ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
170868	93	TTG ...	LKS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
97215	39	ATG ...	MKT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, NSC, R1E, v6-5
49044	57	TTG ...	LIT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, R1E, v6-5
661086	156	ATG ...	MTP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF Upstream	3T3, E14
204535	45	ATG ...	MKM ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
53062	96	CTG ...	LMQ ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
458704	45	TTG ...	LDL ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, R1E, v6-5
463502	33	CTG ...	LSL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, R1E, v6-5
303062	99	ATG ...	MKL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
546887	75	GTG ...	VVT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, NSC, v6-5
446948	54	CTG ...	LAM ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, R1E, v6-5
788	90	ATG ...	MPS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, R1E, v6-5
336704	39	ATG ...	MGC ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E, v6-5

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