Transcript 55074 | MetamORF

Transcript

ID CARD

MetamORF ID

55074

ENSMUST00000195072

Name

Sec62-203

Strand

Biotype

processed_transcript

Start-end positions

30818851-30820032

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:69276

Aliases

3100002M17Rik,
AI844545, AW545092, Dtrp1,
ENSMUSG00000027706, HTP1, MGI:1916526,
NCBI:69276, OFF:Sec62, Sec62,
Tloc1

Chr 3

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
132397	87	GTG ...	VMR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
1223747	63	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
55073	138	CTG ...	LEQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Spleen_B_cell, Testis, v6-5
1221475	96	AAG ...	KEE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1221328	45	CTG ...	LHM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1223516	150	ACG ...	TKE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
135972	84	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
138763	30	GTG ...	VPK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF
1731216	66	GTG ...	VMR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1223752	147	AAG ...	KEE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1223554	54	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
129828	87	CTG ...	LEQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF
1223249	99	ACG ...	TKE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1223461	75	ATG ...	MGI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
133132	96	ATG ...	MGI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
54036	51	CTG ...	LTC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
131598	75	ATG ...	MTT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF

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