Transcript 132443

Transcript

ID CARD

MetamORF ID

132443

ENSMUST00000111336

Name

Sdhc-202

Strand

Biotype

protein_coding

Start-end positions

171127165-171150603

CDS Start-stop positions

171129801-171150578

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:66052

Aliases

0610010E03Rik,
AI316496, AU019277, ENSMUSG00000058076,
MGI:1913302, NCBI:66052, OFF:Sdhc,
Sdhc

Chr 1

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
91775	36	TTG ...	LCL ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
330696	48	TTG ...	LAC ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
384710	93	GTG ...	VLL ...	Ribo-seq	GTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
132442	66	GTG ...	VEG ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1696113	39	ATG ...	MLS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
1681135	54	TTG ...	LFR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
398387	144	ATG ...	MGP ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E
473127	90	CTG ...	LLL ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
59326	30	TTG ...	LSS ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
365778	108	CTG ...	LAV ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, NSC, R1E
35099	33	ATG ...	MSA ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
1854736	45	GTG ...	VKS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	R1E
1350961	96	CTG ...	LEE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC
488760	99	TTG ...	LNL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, NSC, R1E, v6-5
342321	33	GTG ...	VFG ...	Ribo-seq	GTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
145767	114	ATG ...	MLS ...	Ribo-seq	ATG		15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
1533269	120	ATG ...	MVS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
33583	42	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
152714	90	TTG ...	LQT ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, NSC, R1E, v6-5

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