Transcript 61456 | MetamORF

Transcript

ID CARD

MetamORF ID

61456

ENSMUST00000202604

Name

Sdad1-205

Strand

Biotype

retained_intron

Start-end positions

92301635-92309989

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:231452

Aliases

4931421J16,
AA591032, AW538460, ENSMUSG00000029415,
MGI:2140779, NCBI:231452, OFF:Sdad1,
Sdad1

Chr 5

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
566029	30	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
560110	48	CTG ...	LSM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
829363	264	CTG ...	LTE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
519851	42	TTG ...	LSC ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Spleen_B_cell, v6-5
61455	36	GTG ...	VMI ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, Testis, v6-5
64415	102	CTG ...	LQN ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Testis, v6-5
66160	42	TTG ...	LDV ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, Testis, v6-5
1664720	33	TTG ...	LFP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
522097	45	CTG ...	LTS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
560153	60	ATG ...	MMP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, v6-5
830272	81	TTG ...	LVA ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF, Neutrophil, v6-5
1659949	30	TTG ...	LVF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1061982	69	TTG ...	LTF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Neutrophil
66205	78	TTG ...	LRD ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver, Testis, v6-5
62322	105	GTG ...	VLQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, Testis, v6-5
1664941	42	GTG ...	VCA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1662192	42	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1310871	72	TTG ...	LQS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1663750	42	GTG ...	VLC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1662771	48	ATG ...	MCV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
1088786	57	ATG ...	MPK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	v6-5
518794	42	ATG ...	MLS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
560937	159	CTG ...	LGP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3

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