Transcript 13923 | MetamORF

Transcript

ID CARD

MetamORF ID

13923

ENSMUST00000026221

Name

Scd2-201

Strand

Biotype

protein_coding

Start-end positions

44293676-44306864

CDS Start-stop positions

44294388-44303200

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:20250

Aliases

ENSMUSG00000025203,
MGI:98240, mir-5114, Mir5114,
NCBI:20250, OFF:Scd2, Scd-2,
Scd2, swty

Chr 19

ORFs

96 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
962756	207	ATC ...	IAP ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
42431	228	CTG ...	LPV ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, MEF, NSC, Testis, v6-5
14380	60	CTG ...	LAG ...	Ribo-seq	CTG	moderate	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
42971	30	CTG ...	LQA ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Spleen_B_cell, Testis, v6-5
1007133	177	ATG ...	MMR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
960818	96	ACG ...	TGS ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
411941	93	ATT ...	INT ...	Ribo-seq	ATT	moderate	3	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, E14
14015	63	ATG ...	MEA ...	Ribo-seq	ATG	strong	19	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
13922	129	CTG ...	LLS ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Skin_tumor, v6-5
42599	120	CTG ...	LAL ...	Ribo-seq	CTG	moderate	19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
43004	51	TTG ...	LSL ...	Ribo-seq	TTG	weak	17	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1679124	120	GTG ...	VWQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
407225	54	CTG ...	LFQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream sORF	Brain, NSC
41494	72	CTG ...	LAQ ...	Ribo-seq	CTG	strong	20	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
41955	243	CTG ...	LTP ...	Ribo-seq	CTG	moderate	17	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1007953	195	ATG ...	MTP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
960523	237	ACG ...	TTT ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, E14
41731	99	CTG ...	LEE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Testis
42259	129	CTG ...	LQY ...	Ribo-seq	CTG	weak	17	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
962304	96	ATC ...	INI ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
405885	84	ATG ...	MMT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Brain, Glioma, Liver, MEF, MESC, NSC
976463	51	ATT ...	IFY ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
411648	69	AGG ...	RTL ...	Ribo-seq	AGG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14, MEF
42492	276	ATG ...	MGQ ...	Ribo-seq	ATG	strong	19	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
408136	66	GTG ...	VWG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, NSC
961926	249	ACG ...	TPS ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, E14
43103	99	TTG ...	LIN ...	Ribo-seq	TTG	weak	17	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1007582	174	ATG ...	MRG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
14007	126	CTG ...	LSW ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, MEF, NSC, Skin_tumor, v6-5
1201547	84	ATA ...	IRR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
42851	72	CTG ...	LRF ...	Ribo-seq	CTG	moderate	16	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
41729	45	CTG ...	LRS ...	Ribo-seq	CTG	weak	16	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
411611	78	AGG ...	RIY ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
411784	246	ATT ...	ILT ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12
1499723	54	ATG ...	MCG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC, NSC
960698	42	AGG ...	RSE ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
42648	144	ATG ...	MRC ...	Ribo-seq	ATG	moderate	20	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
407602	66	CTG ...	LSV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
1499742	168	CTG ...	LVQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Downstream sORF	NSC
406543	63	TTG ...	LQF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Downstream sORF	Brain, NSC
405513	60	GTG ...	VGS ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, NSC
411577	87	ACG ...	TNL ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12
404471	81	ATG ...	MTD ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, MEF, NSC
42683	45	CTG ...	LVL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
41926	60	TTG ...	LYR ...	Ribo-seq	TTG	moderate	18	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
42917	207	TTG ...	LAS ...	Ribo-seq	TTG	strong	19	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1499872	90	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	NSC
14566	105	CTG ...	LAH ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
407656	33	CTG ...	LTL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream sORF	B_cell, Brain
962389	96	ACG ...	TEA ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
962339	198	ACG ...	TTR ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1500072	45	TTG ...	LES ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	NSC
961824	81	AAG ...	KLQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
42044	135	CTG ...	LVI ...	Ribo-seq	CTG	moderate	17	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1499744	48	CTG ...	LAP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	NSC
42082	81	CTG ...	LPA ...	Ribo-seq	CTG	weak	19	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1202742	183	ATC ...	IRM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
42117	93	CTG ...	LDT ...	Ribo-seq	CTG	moderate	18	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
804492	144	CTG ...	LKL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, MEF
42808	78	CTG ...	LGD ...	Ribo-seq	CTG	moderate	18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
961590	99	ATC ...	IRR ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
411880	75	AAG ...	KLR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
960685	33	ACG ...	TPW ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
400932	102	CTG ...	LET ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, NSC, v6-5
1633946	90	GTG ...	VRP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1499705	51	ATG ...	MTS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream sORF	NSC
1202730	108	AAG ...	KDI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
1499972	60	TTG ...	LSL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	NSC
1500701	78	ATG ...	MQS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC, NSC
42166	36	CTG ...	LGR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Testis
961872	213	ACG ...	TDI ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
411830	60	ATA ...	IPH ...	Ribo-seq	ATA	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, E14
42947	162	TTG ...	LAR ...	Ribo-seq	TTG	moderate	17	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
41894	36	CTG ...	LQK ...	Ribo-seq	CTG	moderate	18	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
411771	204	ATG ...	MIY ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, C2C12, E14
41449	147	TTG ...	LIF ...	Ribo-seq	TTG	weak	20	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1500450	54	CTG ...	LMT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream sORF	NSC
43036	39	CTG ...	LLG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Testis
42255	48	TTG ...	LKR ...	Ribo-seq	TTG	moderate	19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1500652	54	GTG ...	VVL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	NSC
41879	162	CTG ...	LAS ...	Ribo-seq	CTG	strong	18	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
42639	222	CTG ...	LQA ...	Ribo-seq	CTG	weak	18	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1499992	126	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	NSC
960621	75	ATA ...	IYR ...	Ribo-seq	ATA	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, MEF
42001	72	GTG ...	VLR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Testis
961117	180	ATT ...	IAW ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
960734	57	ATC ...	ISA ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
1201488	90	ATA ...	ITN ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
411749	102	ATA ...	IQD ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF Upstream	C2C12
401478	78	CTG ...	LQE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
42672	102	GTG ...	VAA ...	Ribo-seq	GTG	moderate	17	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
411736	45	ATC ...	IAC ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, E14
14333	72	TTG ...	LHG ...	Ribo-seq	TTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1500710	51	TTG ...	LWQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	NSC
13942	222	GTG ...	VST ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain, MEF, NSC, Skin_tumor, Testis, v6-5
1201072	270	AGG ...	RAS ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14

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