Transcript 168631

Transcript

ID CARD

MetamORF ID

168631

ENSMUST00000201253

Name

Scarb2-202

Strand

Biotype

retained_intron

Start-end positions

92504801-92506833

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

NCBI:12492

Aliases

9330185J12Rik,
Cd36l2, ENSMUSG00000029426, LGP85,
LIMP II, LIMP-2, MGI:1196458,
MLGP85, NCBI:12492, OFF:Scarb2,
Scarb2

Chr 5

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
905380	240	GTG ...	VTS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
168875	72	TTG ...	LGG ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, MEF, Spleen_B_cell
176068	207	CTG ...	LLL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
521867	99	GTG ...	VRE ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
175050	78	CTG ...	LAG ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
414836	222	ATC ...	IYS ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, C2C12
175823	207	GTG ...	VRT ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
169663	66	CTG ...	LRA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
174834	117	CTG ...	LQQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
905117	270	ACG ...	TAG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
177932	276	CTG ...	LRG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
904422	168	AGG ...	RCG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
902056	108	ACG ...	TEK ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
179475	147	GTG ...	VSC ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
174861	51	TTG ...	LAE ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, Spleen_B_cell
168630	183	TTG ...	LFQ ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
174342	123	ATG ...	MLL ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
181520	120	CTG ...	LLL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, Spleen_B_cell
902483	255	ACG ...	THG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
180464	261	CTG ...	LNT ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
176784	285	CTG ...	LCA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
179591	204	CTG ...	LLG ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell

Export data