Transcript 63686 | MetamORF

Transcript

ID CARD

MetamORF ID

63686

ENSMUST00000111390

Name

Scarb1-202

Strand

Biotype

protein_coding

Start-end positions

125277089-125341071

CDS Start-stop positions

125277746-125340882

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:20778

Aliases

AI120173,
CD36, Cd36l1, Chohd1,
Cla-1, Cla1, D5Ertd460e,
ENSMUSG00000037936, Hdlq1, Hlb398,
MGI:893578, mSR-BI, NCBI:20778,
OFF:Scarb1, Scarb1, SR-B1,
SR-BI, Srb1, SRBI

Chr 5

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
567881	168	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	E14, Neutrophil
63923	234	CTG ...	LQG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, Neutrophil, Testis
872141	36	ATG ...	MGL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
64453	42	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil
559246	75	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
66424	42	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, v6-5
63734	84	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil
1061469	48	ATG ...	MPR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, NSC
177058	108	CTG ...	LLL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, Liver, Neutrophil
519090	60	CTG ...	LAT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Liver
873520	207	TTG ...	LKA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
871724	114	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil
568814	57	ATG ...	MTI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
65966	63	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, NSC
172276	105	CTG ...	LLR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Neutrophil
62402	72	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil
63685	258	ATG ...	MAH ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, Testis
873150	180	CTG ...	LTQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
873437	126	ATG ...	MTT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Neutrophil
63972	189	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Neutrophil
66292	192	TTG ...	LLL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, Neutrophil
571968	102	CTG ...	LSS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil
565786	60	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
63816	186	CTG ...	LRE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Neutrophil
1512572	54	CTG ...	LPM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
62969	168	CTG ...	LSS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
573624	135	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
870574	48	CTG ...	LAF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
65923	51	ATG ...	MAQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil
572462	114	CTG ...	LGS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil
1063844	75	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil, NSC
873210	162	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
567919	102	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC

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