Transcript 59743 | MetamORF

Transcript

ID CARD

MetamORF ID

59743

ENSMUST00000148920

Name

S100pbp-213

Strand

Biotype

processed_transcript

Start-end positions

129150547-129189577

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

NCBI:74648

Aliases

4930429A08Rik,
AI851343, ENSMUSG00000040928, MGI:1921898,
NCBI:74648, OFF:S100pbp, S100pbp,
S100pbpr

Chr 4

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
160573	84	TTG ...	LGE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1230444	69	ATT ...	IWS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
152479	93	ATG ...	MSW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
149638	126	ATG ...	MPH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1226285	135	GTG ...	VGV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1229708	78	ATT ...	IAP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1231000	105	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
146758	99	ATG ...	MKM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1224759	84	TTG ...	LKP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1230265	93	GTG ...	VAK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
59742	204	CTG ...	LMD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Testis, v6-5
61238	222	TTG ...	LGE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, R1E, Testis, v6-5
1231386	39	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1226798	102	AGG ...	RNS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1225171	108	AGG ...	RYS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
151679	48	ATG ...	MMA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14

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