Transcript 9564 | MetamORF

Transcript

ID CARD

MetamORF ID

9564

ENSMUST00000078830

Name

Rtn4-202

Strand

Biotype

protein_coding

Start-end positions

29692947-29744331

CDS Start-stop positions

29693189-29742029

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:68585

Aliases

1110020G17Rik,
AA407876, AA409940, AA960376,
ASY, C130026I10Rik, ENSMUSG00000020458,
MGI:1915835, mKIAA0886, mKIAA4153,
NCBI:68585, NgA, NOGO,
Nogo-A, Nogo-B, Nogo-C,
NSP-CL, OFF:Rtn4, Rtn4

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
298567	33	TTG ...	LVP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
308110	57	TTG ...	LPY ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
295190	63	TTG ...	LVR ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, Spleen_B_cell
91765	45	CTG ...	LEW ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Testis
1338815	144	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
90648	30	CTG ...	LRR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Spleen_B_cell, Testis
308215	105	TTG ...	LRV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, Spleen_B_cell
19592	30	GTG ...	VPA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
773136	84	CTG ...	LPQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
313136	96	ATG ...	MKA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
317157	198	CTG ...	LGT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
19481	87	GTG ...	VAR ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, Spleen_B_cell, Testis
9563	93	GTG ...	VGI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Skin_tumor
316032	39	ATG ...	MPW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
91908	78	TTG ...	LTS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Testis
19859	120	CTG ...	LEL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Spleen_B_cell, Testis
300510	114	CTG ...	LSP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, Spleen_B_cell
453699	186	TTG ...	LLI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
21287	33	CTG ...	LPN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Spleen_B_cell, Testis
18553	126	TTG ...	LFL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Spleen_B_cell, Testis
22011	81	TTG ...	LLT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
297398	195	CTG ...	LGT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
448681	33	CTG ...	LQH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Spleen_B_cell
314408	60	TTG ...	LQT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain
17601	42	CTG ...	LPV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Spleen_B_cell, Testis
293438	63	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC

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