Transcript 291381

Transcript

ID CARD

MetamORF ID

291381

ENSMUST00000126802

Name

Rptor-204

Strand

Biotype

retained_intron

Start-end positions

119811246-119867389

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:74370

Aliases

4932417H02Rik,
ENSMUSG00000025583, MGI:1921620, mKIAA1303,
NCBI:74370, OFF:Rptor, Rap,
Raptor, Rptor

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
293106	132	GTG ...	VGN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
301872	48	ATG ...	MCS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
298172	63	ATG ...	MHP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
297525	81	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
291380	114	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
303988	144	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
299752	102	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
301841	87	CTG ...	LHL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
297353	81	GTG ...	VAM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
311479	87	GTG ...	VWL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
301588	39	ATG ...	MGT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
305751	150	GTG ...	VAI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
301679	207	CTG ...	LIA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
306544	69	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
306986	141	CTG ...	LSV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
301123	69	GTG ...	VEN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
292504	72	GTG ...	VFT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
294389	63	TTG ...	LWE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
293597	30	CTG ...	LIP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
292247	135	GTG ...	VGI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
305474	90	GTG ...	VQL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
299672	33	CTG ...	LLI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
294119	30	TTG ...	LES ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
301561	165	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain

Export data