Transcript 15059 | MetamORF

Transcript

ID CARD

MetamORF ID

15059

ENSMUST00000141934

Name

Rpn2-207

Strand

Biotype

retained_intron

Start-end positions

157316177-157322471

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:20014

Aliases

1300012C06Rik,
AV261018, ENSMUSG00000027642, MGI:98085,
NCBI:20014, OFF:Rpn2, Rpn-2,
Rpn2

Chr 2

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1213887	90	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1010746	39	TTG ...	LLL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, NSC
107378	78	GTG ...	VVS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, v6-5
1210625	165	ATT ...	IHG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
498529	111	CTG ...	LFR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
492966	87	TTG ...	LEP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, NSC, Spleen_B_cell
1052617	33	CTG ...	LLF ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, NSC
1208067	147	ATC ...	IRI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1208159	54	CTG ...	LFT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, NSC
733320	78	ATG ...	MSP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
48975	84	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC, v6-5
15058	45	CTG ...	LAG ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
738784	75	GTG ...	VSN ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
1209942	78	AAG ...	KYL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
736449	48	GTG ...	VDP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
15910	102	CTG ...	LDS ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
1210974	51	ACG ...	TFL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
15263	63	CTG ...	LGT ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
15659	72	CTG ...	LAV ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
1214286	141	ATT ...	IGA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
15069	54	GTG ...	VTF ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
15424	129	CTG ...	LGL ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
1210611	54	ATA ...	IHS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1368296	117	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
967490	66	ATA ...	IST ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
47659	60	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, Spleen_B_cell
1207729	51	ATC ...	ILS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14

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