Transcript 33444 | MetamORF

Transcript

ID CARD

MetamORF ID

33444

ENSMUST00000044103

Name

Rpl39l-201

Strand

Biotype

protein_coding

Start-end positions

10170228-10174911

CDS Start-stop positions

10174310-10174465

CDS Relative positions

204-359

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:68172

Aliases

4930517K11Rik,
ENSMUSG00000039209, MGI:1915422, NCBI:68172,
OFF:Rpl39l, Rpl39l

Chr 16

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
35427	267	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
33895	129	GTG ...	VCL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis, v6-5
35679	222	GTG ...	VQG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
34675	90	CTG ...	LAI ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Testis
33443	123	CTG ...	LSD ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis, v6-5
35698	243	GTG ...	VWS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
34584	156	ATG ...	MAS ...	Predicted Ribo-seq	ATG	strong	5	sORFs_org_Mouse Mackowiak2015	CDS sORF	E14, R1E, Testis, v6-5
34457	114	TTG ...	LVL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Testis
35375	108	TTG ...	LVW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Testis, v6-5
35341	276	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
35264	96	GTG ...	VVQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
33551	48	CTG ...	LPF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Testis, v6-5

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