Transcript 300140

Transcript

ID CARD

MetamORF ID

300140

ENSMUST00000125675

Name

Rnft1-202

Strand

Biotype

processed_transcript

Start-end positions

86484685-86490511

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:76892

Aliases

0610013E23Rik,
AV007605, ENSMUSG00000020521, MGI:1924142,
NCBI:76892, OFF:Rnft1, Rnft1

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1595763	48	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
932675	93	AGG ...	RAC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
300139	63	CTG ...	LAG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
645151	195	GTG ...	VHG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, v6-5
316062	75	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
447598	33	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
452370	84	CTG ...	LKA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Spleen_B_cell
455917	75	ATG ...	MRG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
1398920	168	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
306257	69	GTG ...	VFL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
1701668	57	CTG ...	LYL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
935865	81	AAG ...	KWL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
452844	129	CTG ...	LLV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
1757926	78	GTG ...	VSG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1337415	75	TTG ...	LQK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
653972	45	CTG ...	LGI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
318788	69	TTG ...	LWL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
448710	123	GTG ...	VAS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Spleen_B_cell
454810	81	CTG ...	LVM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
445604	126	CTG ...	LVA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Spleen_B_cell
314847	63	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
91730	57	CTG ...	LKQ ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
310193	72	CTG ...	LVF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, v6-5
775494	102	TTG ...	LAR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF

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