Transcript 159078

Transcript

ID CARD

MetamORF ID

159078

ENSMUST00000096386

Name

Rnf41-201

Strand

Biotype

protein_coding

Start-end positions

128411746-128440338

CDS Start-stop positions

128428614-128438434

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:67588

Aliases

2210404G21Rik,
4930511A05Rik, 4933415P08Rik, D10Ertd722e,
ENSMUSG00000025373, FLRF, MGI:1914838,
NCBI:67588, Nrdp1, OFF:Rnf41,
Rnf41

Chr 10

ORFs

55 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1244767	261	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
255040	96	GTG ...	VTT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
267257	81	TTG ...	LAA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
289545	141	ATG ...	MNC ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
443808	93	CTG ...	LRP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, B_cell, E14, Spleen_B_cell
176547	33	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
243482	66	TTG ...	LSG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
227502	33	GTG ...	VTV ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
287930	66	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
175194	102	TTG ...	LPV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
289999	132	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
280621	72	GTG ...	VLL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
187457	78	TTG ...	LSL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, E14, MEF, v6-5
575418	81	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
290378	102	GTG ...	VES ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
254236	72	CTG ...	LCS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
251957	48	CTG ...	LIV ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
78570	42	ATG ...	MRL ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
238027	48	TTG ...	LKM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
636299	84	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
290633	45	GTG ...	VSV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Liver, MEF, Spleen_B_cell
199664	42	ATG ...	MPM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
255992	36	CTG ...	LGF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
189539	33	CTG ...	LPG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
196274	159	TTG ...	LPT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
183023	51	CTG ...	LHH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
215211	75	ATG ...	MLC ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
288326	75	TTG ...	LQS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain
1266791	30	ATA ...	ILR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
261477	168	TTG ...	LSR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
288653	48	CTG ...	LQP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, Spleen_B_cell
1278526	177	GTG ...	VCY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	E14
224633	60	ATG ...	MPS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, v6-5
176708	57	TTG ...	LTT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF
170005	78	CTG ...	LML ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
241189	57	CTG ...	LAP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
160789	69	CTG ...	LLS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
224509	87	CTG ...	LCL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
1256520	237	ACG ...	TRP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
174371	42	GTG ...	VTS ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
165245	66	GTG ...	VSM ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
280777	39	ATG ...	MVL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, v6-5
202759	45	ATG ...	MRT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
61301	45	CTG ...	LSG ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14, Spleen_B_cell, v6-5
290588	99	GTG ...	VSS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Spleen_B_cell
86710	66	ATG ...	MGY ...	Ribo-seq	ATG	strong	11	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
275830	36	ATG ...	MNA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
166440	54	GTG ...	VRT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
1283181	69	ACG ...	TRP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
287445	51	CTG ...	LNT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
247428	159	ATG ...	MNC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
246061	60	CTG ...	LQR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
257969	60	CTG ...	LSS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
289390	117	GTG ...	VCY ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, Spleen_B_cell
159077	54	TTG ...	LEN ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF, v6-5

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