Transcript 440670

Transcript

ID CARD

MetamORF ID

440670

ENSMUST00000121153

Name

Rlim-202

Strand

Biotype

protein_coding

Start-end positions

103957163-103981284

CDS Start-stop positions

103962491-103966656

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:19820

Aliases

AL022832,
AW743871, ENSMUSG00000056537, Ha1r,
MGI:1342291, NCBI:19820, OFF:Rlim,
Rlim, Rlim1, Rnf12

Chr X

ORFs

73 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
282303	102	TTG ...	LQL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, Spleen_B_cell
443052	93	CTG ...	LDQ ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, Spleen_B_cell
1280287	69	AGG ...	RCE ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
629006	33	TTG ...	LSY ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1278392	219	ATG ...	MST ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1279273	36	AAG ...	KIS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
280512	30	CTG ...	LEN ...	Ribo-seq	CTG	strong	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
7320	117	CTG ...	LKE ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, R1E, Spleen_B_cell
285411	36	ATG ...	MKI ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
440897	114	GTG ...	VKE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, Spleen_B_cell
927783	93	ATT ...	ILT ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1276972	111	AAG ...	KEA ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
442639	75	CTG ...	LSH ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, MEF, Spleen_B_cell
1277943	36	AGG ...	RIW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1279626	84	AGG ...	RLR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
281523	36	GTG ...	VKL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
7334	33	CTG ...	LKE ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E
1279018	39	ATC ...	IKI ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
632137	39	TTG ...	LHY ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC
1279138	138	ATC ...	IGE ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1276579	39	AGG ...	RLV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
443195	213	GTG ...	VAV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
444240	108	GTG ...	VKV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
1280079	276	GTG ...	VFA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1278087	72	AGG ...	RGQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
442276	51	GTG ...	VIQ ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
1277896	66	AGG ...	RSF ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
926451	81	AAG ...	KEV ...	Ribo-seq	AAG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
280497	66	CTG ...	LQL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
1119640	66	TTG ...	LSQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
7255	33	GTG ...	VLG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain
441899	156	GTG ...	VKV ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, R1E, Spleen_B_cell
632896	36	TTG ...	LSS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, R1E
440846	36	GTG ...	VPQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
441756	57	CTG ...	LNQ ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, R1E, Spleen_B_cell
7171	84	GTG ...	VKF ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, R1E, Spleen_B_cell
767470	123	ATG ...	MFN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
7326	63	ATG ...	MKM ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF, Neutrophil, R1E
441704	36	ATG ...	MKV ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E, Spleen_B_cell
443001	231	ATG ...	MEE ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
629339	54	TTG ...	LMK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
442218	57	ATG ...	MEA ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, R1E, Spleen_B_cell
632671	51	ATG ...	MKV ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
1277127	51	AAG ...	KTN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
442179	99	CTG ...	LAH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell
282802	54	CTG ...	LEI ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E, Spleen_B_cell
633056	45	GTG ...	VAL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
1119244	39	CTG ...	LSV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
443371	81	ATG ...	MVD ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
928134	60	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
7230	57	ATG ...	MMK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E
443492	216	CTG ...	LVA ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
926827	60	GTG ...	VKK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
275663	48	GTG ...	VEV ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, R1E, Spleen_B_cell
278845	36	GTG ...	VVR ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E, Spleen_B_cell
278620	72	ATG ...	MLT ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E, Spleen_B_cell
442142	198	CTG ...	LVP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
276169	39	GTG ...	VNP ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, R1E, Spleen_B_cell
1279084	30	AAG ...	KQV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
443072	159	GTG ...	VVK ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E, Spleen_B_cell
1276690	39	ACG ...	TSL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
277566	60	ATG ...	MKV ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, R1E, Spleen_B_cell
283365	75	GTG ...	VTS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
440681	57	GTG ...	VTV ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Spleen_B_cell
1278895	48	ATC ...	IFW ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
286774	99	CTG ...	LRK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
1279089	210	ACG ...	TST ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
440776	30	GTG ...	VNH ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, R1E, Spleen_B_cell
7068	54	ATG ...	MKT ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF, Neutrophil, R1E, Spleen_B_cell
280231	54	GTG ...	VNV ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
1279804	33	ACG ...	TEW ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1277882	72	ATA ...	IGP ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
442753	63	CTG ...	LHL ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, R1E, Spleen_B_cell

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