Transcript 61507 | MetamORF

Transcript

ID CARD

MetamORF ID

61507

ENSMUST00000198413

Name

Rilpl2-202

Strand

Biotype

retained_intron

Start-end positions

124475246-124478310

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTA ...

Genome browsers

UCSC

Gene

NCBI:80291

Aliases

ENSMUSG00000029401,
MGI:1933112, NCBI:80291, OFF:Rilpl2,
Rilpl2

Chr 5

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
65737	162	GTG ...	VSL ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Neutrophil, Spleen_B_cell, Testis
61506	84	GTG ...	VLP ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Neutrophil, Spleen_B_cell, Testis
903890	138	CTG ...	LRM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
901743	42	AGG ...	RKT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
62589	39	GTG ...	VQS ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Liver, R1E, Spleen_B_cell, Testis
902487	33	AGG ...	RAP ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
65747	168	CTG ...	LCV ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Neutrophil, Spleen_B_cell, Testis
64175	108	CTG ...	LRA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Neutrophil, Spleen_B_cell, Testis
62112	123	CTG ...	LFS ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
518105	261	GTG ...	VGR ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell
518796	249	CTG ...	LMA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
63343	42	CTG ...	LRT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Neutrophil, Spleen_B_cell, Testis
517756	264	GTG ...	VHG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
521295	144	CTG ...	LTQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
904613	54	AGG ...	RPP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
64303	114	ATG ...	MVR ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
517919	213	CTG ...	LQF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
517124	297	CTG ...	LTT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell
521124	267	TTG ...	LVH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
62337	114	GTG ...	VEL ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, MEF, Neutrophil, Spleen_B_cell, Testis
62091	144	GTG ...	VRV ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, Spleen_B_cell, Testis
901621	51	AGG ...	RTA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
901681	204	ACG ...	TCD ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
521544	171	GTG ...	VDS ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
519267	192	GTG ...	VME ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
904003	57	AGG ...	RRR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
902147	294	ACG ...	TVP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
522300	240	CTG ...	LGS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
521228	282	GTG ...	VYD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
902003	195	AAG ...	KAA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
902594	72	ATC ...	ITP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC

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