Transcript 25110 | MetamORF

Transcript

ID CARD

MetamORF ID

25110

ENSMUST00000067384

Name

Rhob-201

Strand

Biotype

protein_coding

Start-end positions

8497661-8500009

CDS Start-stop positions

8499042-8499632

CDS Relative positions

378-968

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:11852

Aliases

AA017882,
Arh6, Arhb, ENSMUSG00000054364,
MGI:107949, NCBI:11852, OFF:Rhob,
Rhob

Chr 12

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
323001	204	GTG ...	VQL ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14
25109	84	GTG ...	VHR ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, Liver, Neutrophil, Spleen_B_cell, Testis, v6-5
939209	246	ATG ...	MTT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain
327122	111	CTG ...	LPQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
321630	135	GTG ...	VGA ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
938552	228	ACG ...	TNS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
324065	183	GTG ...	VLL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
419970	171	AGG ...	RWT ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12
25160	69	CTG ...	LRP ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, Neutrophil, Spleen_B_cell, Testis, v6-5
420090	147	AAG ...	KQR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF Upstream	C2C12
25419	186	ATG ...	MWR ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, NSC, Testis
458846	42	GTG ...	VLG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, Spleen_B_cell
322271	255	CTG ...	LPR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14
326640	36	GTG ...	VRQ ...	Ribo-seq	GTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
939821	132	ACG ...	TAA ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
25235	75	ATG ...	MPL ...	Ribo-seq	ATG	weak	14	sORFs_org_Mouse Johnstone2016	sORF Upstream	B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell, Testis, v6-5
1697812	63	ATG ...	MPP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
326302	78	ATG ...	MCP ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC
939962	78	ACG ...	TSS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
420053	45	CTG ...	LYP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, C2C12
322989	258	GTG ...	VGH ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC

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