Transcript 344358

Transcript

ID CARD

MetamORF ID

344358

ENSMUST00000163797

Name

Rcbtb2-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

73161940-73182602

CDS Start-stop positions

-73173860

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:105670

Aliases

2610028E02Rik,
2810420M18Rik, AI448345, AW240694,
Chc1l, ENSMUSG00000022106, MGI:1917200,
NCBI:105670, OFF:Rcbtb2, RC/BTB2,
Rcbtb2

Chr 14

ORFs

7 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
346451	168	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
347206	177	TTG ...	LLD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
351136	111	GTG ...	VAE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
349591	102	CTG ...	LTV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
344875	99	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
344357	66	TTG ...	LGT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
348797	141	TTG ...	LKK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain

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