Transcript 8067 | MetamORF

Transcript

ID CARD

MetamORF ID

8067

ENSMUST00000143205

Name

Rars-203

Strand

Biotype

processed_transcript

Start-end positions

35815668-35820109

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:104458

Aliases

2610011N19Rik,
2610037E21Rik, AL033339, AW985894,
ENSMUSG00000018848, MGI:1914297, NCBI:104458,
OFF:Rars, Rars, Rars1

Chr 11

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1291767	51	AAG ...	KDI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
8557	159	GTG ...	VPG ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis
453181	69	CTG ...	LFE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, R1E, Spleen_B_cell
447565	105	ATG ...	MGA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Spleen_B_cell
450318	33	TTG ...	LCS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1037012	33	GTG ...	VDN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1288997	87	ATA ...	IER ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
449848	90	CTG ...	LAA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, R1E, Spleen_B_cell
1037273	36	GTG ...	VVD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
20928	45	GTG ...	VTH ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Spleen_B_cell, Testis
451156	36	GTG ...	VGF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, Spleen_B_cell
1287200	132	ATA ...	IVK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
8429	186	GTG ...	VDD ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis
1285462	48	AAG ...	KII ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
8066	165	GTG ...	VFV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis
450375	48	ATG ...	MMA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, Spleen_B_cell
8858	192	GTG ...	VQV ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis
1287206	42	AAG ...	KQT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
447576	102	TTG ...	LDI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
449627	51	TTG ...	LKK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, Spleen_B_cell
1290363	48	AAG ...	KKK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1286275	81	ATC ...	IKQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1286632	45	ATT ...	IVK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
8911	144	GTG ...	VPL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis
453313	51	GTG ...	VFC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1482915	36	CTG ...	LCA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
448315	81	CTG ...	LTW ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, Spleen_B_cell
1285863	96	ATA ...	IPM ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
445786	72	CTG ...	LPS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, Spleen_B_cell
930182	168	ATT ...	IVF ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
452733	90	ATG ...	MTH ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, Spleen_B_cell
448548	60	TTG ...	LCK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, Spleen_B_cell
1696769	42	GTG ...	VKL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF
1285608	39	ATT ...	IND ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
8634	129	GTG ...	VKS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, Skin_tumor, Spleen_B_cell
1290076	54	AAG ...	KWM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14

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