Transcript 689577

Transcript

ID CARD

MetamORF ID

689577

ENSMUST00000052374

Name

Rangap1-201

Strand

Biotype

protein_coding

Start-end positions

81704248-81729919

CDS Start-stop positions

81705189-81724597

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:19387

Aliases

C79654,
ENSMUSG00000022391, Fug1, MGI:103071,
mKIAA1835, NCBI:19387, OFF:Rangap1,
Rangap1

Chr 15

ORFs

61 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
948206	183	CTG ...	LVT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF
791169	120	ATG ...	MEC ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC
356124	48	CTG ...	LKT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
364043	99	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
363439	45	GTG ...	VKT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
363496	63	CTG ...	LQP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, R1E
365041	171	CTG ...	LAE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E
470623	132	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1352507	30	ATG ...	MLS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1145067	105	GTG ...	VPR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
361038	78	TTG ...	LTA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
948083	45	AAG ...	KTL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
364635	177	TTG ...	LWL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, R1E
364429	198	TTG ...	LQS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	CDS sORF	Brain, R1E
949636	258	ATC ...	IAG ...	Ribo-seq	ATC		3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, MEF
469456	114	ATG ...	MMM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
976016	144	GTG ...	VTD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
360562	123	ATG ...	MRK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
950422	147	ACG ...	TEP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
356899	180	ATG ...	MKM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
361371	51	GTG ...	VTC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, R1E
791000	129	TTG ...	LDP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
361940	87	TTG ...	LKS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
356015	195	ATG ...	MMR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
359329	39	TTG ...	LPN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
471740	30	CTG ...	LAP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil
364362	93	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
11802	81	GTG ...	VSP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
689576	93	GTG ...	VFT ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E
1184321	51	ATG ...	MTT ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
687926	36	CTG ...	LGL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, R1E
470251	111	ATG ...	MMR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
363429	81	CTG ...	LQG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, R1E
11594	66	TTG ...	LWL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E
366434	48	GTG ...	VTC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
473614	294	TTG ...	LCP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	CDS sORF	B_cell
1352116	42	TTG ...	LPS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
947969	36	ACG ...	TEP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
365563	300	ATG ...	MMR ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
355228	39	CTG ...	LRN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1145183	111	CTG ...	LFV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
948436	51	ATC ...	IAW ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
790453	108	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
691505	141	GTG ...	VTT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
365982	249	CTG ...	LRE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	CDS sORF	Brain, R1E
11899	111	ATG ...	MLP ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, R1E
948390	90	ATA ...	ICH ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
359162	174	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
950159	162	ATC ...	IAW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
11773	39	ATG ...	MTE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, R1E
366837	69	CTG ...	LHS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
366294	150	ATG ...	MTE ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC, R1E
11956	108	CTG ...	LPW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E
948454	66	ATC ...	ILV ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
365409	96	TTG ...	LLR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
471575	75	TTG ...	LET ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
358502	147	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
788706	231	GTG ...	VHE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
363663	192	ATG ...	MRE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
11506	60	CTG ...	LAE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E
358248	150	ATG ...	MMR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell

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