Transcript 357632

Transcript

ID CARD

MetamORF ID

357632

ENSMUST00000168065

Name

Racgap1-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

99628618-99639817

CDS Start-stop positions

99634306-

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:26934

Aliases

AI227039,
AI327394, Band25, ENSMUSG00000023015,
gtl11, GTPase, MgcRacGAP,
MGI:1349423, mKIAA1478, NCBI:26934,
OFF:Racgap1, Racgap1

Chr 15

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31432	90	CTG ...	LFP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
31529	246	GTG ...	VKD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
32358	195	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
1183504	99	ATG ...	MPV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
1043927	171	TTG ...	LKA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
686033	54	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
472046	60	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
1001834	84	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
472060	63	TTG ...	LMN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
31104	174	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
32600	114	CTG ...	LEP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
1044244	57	CTG ...	LLW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
31117	147	GTG ...	VNS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain

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