Transcript 55683 | MetamORF

Transcript

ID CARD

MetamORF ID

55683

ENSMUST00000060232

Name

Rab2a-201

Strand

Biotype

protein_coding

Start-end positions

8535644-8607778

CDS Start-stop positions

8535863-8606503

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:59021

Aliases

9330148M11Rik,
C80220, ENSMUSG00000047187, MGI:1928750,
NCBI:59021, OFF:Rab2a, Rab2,
Rab2a

Chr 4

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1556444	120	ATG ...	MRQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
1229507	87	ACG ...	TLL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
145679	138	TTG ...	LFR ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, MEF, Spleen_B_cell
1557028	132	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
149356	117	CTG ...	LCS ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, MEF, Spleen_B_cell
1554104	63	CTG ...	LVR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1016410	99	TTG ...	LAL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
58698	117	GTG ...	VRA ...	Ribo-seq	GTG		16	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1233320	144	AAG ...	KKG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1228012	72	AAG ...	KVK ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1232629	93	AAG ...	KER ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1510924	156	ATG ...	MKK ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, NSC
148516	144	CTG ...	LLL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, MEF, Spleen_B_cell
1016801	84	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
1231742	60	AGG ...	RSP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
55682	63	GTG ...	VLR ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis
156661	30	CTG ...	LPL ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
58626	72	CTG ...	LAR ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
899975	105	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
58882	78	GTG ...	VSL ...	Ribo-seq	GTG		17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1058439	48	ATG ...	MDL ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil
1226529	102	AGG ...	RRT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
897866	75	ACG ...	THL ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC

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