Transcript 9691 | MetamORF

Transcript

ID CARD

MetamORF ID

9691

ENSMUST00000021001

Name

Rab10-201

Strand

Biotype

protein_coding

Start-end positions

3247428-3309969

CDS Start-stop positions

3249787-3309418

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:19325

Aliases

AW107754,
ENSMUSG00000020671, MGI:105066, NCBI:19325,
OFF:Rab10, Rab10

Chr 12

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
25807	159	CTG ...	LRS ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis
665278	114	GTG ...	VRG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, MEF
323449	63	CTG ...	LRP ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
328494	33	ATG ...	MPS ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
323747	198	TTG ...	LVV ...	Ribo-seq	TTG		17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
939173	45	ACG ...	TVK ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
938635	54	ACG ...	TGK ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1297317	111	ACG ...	TRP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
10051	102	GTG ...	VTW ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
24499	219	TTG ...	LSR ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis
940452	30	AGG ...	RSN ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
323906	42	ATG ...	MVL ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell
321135	54	TTG ...	LQG ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E
9690	57	ATG ...	MTS ...	Ribo-seq	ATG	weak	21	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5
328057	33	TTG ...	LRT ...	Ribo-seq	TTG	moderate	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
24782	42	CTG ...	LLR ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
9908	36	TTG ...	LYR ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell
25317	183	CTG ...	LGE ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis
24570	39	CTG ...	LRP ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
25548	72	CTG ...	LLS ...	Ribo-seq	CTG	moderate	14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis
458597	150	TTG ...	LSA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
1296694	150	AGG ...	RKE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
9882	57	GTG ...	VTW ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis
939214	48	ACG ...	TTR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
325905	171	TTG ...	LGL ...	Ribo-seq	TTG		17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
327260	189	GTG ...	VSS ...	Ribo-seq	GTG		17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
939380	72	AGG ...	RPG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
460065	96	CTG ...	LLR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
25695	228	CTG ...	LRG ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis
665508	78	GTG ...	VFK ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
322078	36	CTG ...	LAG ...	Ribo-seq	CTG	strong	10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell
24706	33	ATG ...	MPM ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
457978	42	GTG ...	VAL ...	Ribo-seq	GTG	strong	10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
24334	75	CTG ...	LLR ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
325268	267	GTG ...	VGA ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell
331165	81	TTG ...	LYR ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell
938809	39	ACG ...	TLP ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
941072	93	ACG ...	TTR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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