Transcript 83223 | MetamORF

Transcript

ID CARD

MetamORF ID

83223

ENSMUST00000207180

Name

Qars-219

Strand

Biotype

nonsense_mediated_decay

Start-end positions

108514204-108515935

CDS Start-stop positions

-108515137

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:97541

Aliases

1110018N24Rik,
1200016L19Rik, C80286, ENSMUSG00000032604,
GLNRS, MGI:1915851, NCBI:97541,
OFF:Qars, Qars, Qars1

Chr 9

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
615957	75	ATG ...	MRP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	3T3
1692838	75	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
616459	45	TTG ...	LLP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	3T3, v6-5
268254	99	CTG ...	LWL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, v6-5
6253	78	TTG ...	LTS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	3T3, v6-5
84081	102	GTG ...	VTC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	3T3, E14, Testis, v6-5
84088	111	GTG ...	VPN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	3T3, E14, Spleen_B_cell, Testis, v6-5
761427	39	CTG ...	LVM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
617549	78	CTG ...	LMR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, v6-5
259586	63	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
83374	123	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Testis, v6-5
87197	123	TTG ...	LDI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Spleen_B_cell, Testis, v6-5
86402	117	GTG ...	VER ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	3T3, E14, Testis, v6-5
86121	66	GTG ...	VDP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Testis
255869	36	TTG ...	LVC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
6619	153	GTG ...	VVE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	E14, Testis, v6-5
85941	33	GTG ...	VCE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	E14, Testis
85239	117	TTG ...	LAK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis
83222	108	TTG ...	LEV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	3T3, E14, Testis, v6-5
760413	33	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
265424	54	TTG ...	LGT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
87193	135	GTG ...	VDC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Testis, v6-5

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