Transcript 156405

Transcript

ID CARD

MetamORF ID

156405

ENSMUST00000123484

Name

Ptprf-202

Strand

Biotype

processed_transcript

Start-end positions

118208989-118217680

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:19268

Aliases

AA591035,
ENSMUSG00000033295, LAR, LARS,
MGI:102695, NCBI:19268, OFF:Ptprf,
Ptprf, RPTP-LAR

Chr 4

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
163086	261	GTG ...	VHK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
1554913	132	GTG ...	VKC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1232627	279	ATC ...	IDF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1226266	57	CTG ...	LCY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
166509	114	GTG ...	VKT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver
145738	48	TTG ...	LTL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
1233894	219	ACG ...	TVH ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1233801	255	AAG ...	KTK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
156404	72	CTG ...	LTW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1555255	69	CTG ...	LVD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
161660	135	GTG ...	VVD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
553356	42	CTG ...	LDS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
868053	33	GTG ...	VAL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
1556293	51	TTG ...	LAT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1232534	207	AGT ...	SAG ...	Ribo-seq	AGT		1	sORFs_org_Mouse	ncRNA sORF	E14
1555139	75	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
163952	81	GTG ...	VQT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver
1553934	66	GTG ...	VDT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
163260	216	GTG ...	VHC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
1555553	81	GTG ...	VSC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
1555077	99	GTG ...	VAP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
868622	54	GTG ...	VIS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
162144	159	CTG ...	LER ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver
1554864	57	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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