Transcript 494579

Transcript

ID CARD

MetamORF ID

494579

ENSMUST00000151705

Name

Ptpn1-207

Strand

Biotype

processed_transcript

Start-end positions

167932372-167967785

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:19246

Aliases

ENSMUSG00000027540,
MGI:97805, NCBI:19246, OFF:Ptpn1,
PTP-1B, PTP-HA2, PTP1B,
Ptpn1

Chr 2

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
967883	162	ATG ...	MKP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
1213026	141	ACG ...	TRP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
498255	75	CTG ...	LLF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Spleen_B_cell
108259	123	TTG ...	LHQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
969416	87	TTG ...	LIK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
47806	57	TTG ...	LGL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
969035	33	AAG ...	KPR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
808162	237	GTG ...	VAG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
965462	186	ACG ...	TAV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
111319	60	TTG ...	LTT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
812940	48	CTG ...	LGT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1206161	180	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
967677	63	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
809794	99	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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