Transcript 493795

Transcript

ID CARD

MetamORF ID

493795

ENSMUST00000147210

Name

Ptpn1-206

Strand

Biotype

processed_transcript

Start-end positions

167932057-167974737

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:19246

Aliases

ENSMUSG00000027540,
MGI:97805, NCBI:19246, OFF:Ptpn1,
PTP-1B, PTP-HA2, PTP1B,
Ptpn1

Chr 2

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
497484	48	ATG ...	MCP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
96006	111	CTG ...	LEH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, R1E
46078	93	GTG ...	VVH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
498698	81	ATG ...	MQK ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Neutrophil, R1E, Spleen_B_cell
497972	168	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
47839	36	GTG ...	VTG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
114362	213	CTG ...	LHF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, R1E, Spleen_B_cell
114526	36	TTG ...	LAT ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
47053	66	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
810269	240	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
111319	60	TTG ...	LTT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
14878	108	TTG ...	LTL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, R1E
740157	69	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
47806	57	TTG ...	LGL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
737645	51	CTG ...	LRW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
117326	54	CTG ...	LKM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
15840	114	TTG ...	LKL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, R1E
108259	123	TTG ...	LHQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, R1E
813597	54	TTG ...	LTC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
808162	237	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
498703	60	GTG ...	VPS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
116689	48	ATG ...	MSS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
493794	108	GTG ...	VRT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell

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