Transcript 68642 | MetamORF

Transcript

ID CARD

MetamORF ID

68642

ENSMUST00000181150

Name

Ptms-203

Strand

Biotype

retained_intron

Start-end positions

124914049-124915224

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:69202

Aliases

2610009E16Rik,
ENSMUSG00000030122, MGI:1916452, NCBI:69202,
OFF:Ptms, Ptms

Chr 6

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
70529	54	GTG ...	VEE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil, Testis, v6-5
1243273	45	AGG ...	RWR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
415282	60	AAG ...	KKR ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
1244002	39	AGG ...	RRR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1246533	144	AGG ...	RRM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
3070	33	GTG ...	VRK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Testis
1739160	132	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1247540	138	ATG ...	MEL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
415231	36	AAG ...	KRQ ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
1740422	183	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
908719	45	AAG ...	KAG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
909066	57	AAG ...	KVE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
203121	183	ATG ...	MKQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
68641	75	CTG ...	LKE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, E14, Neutrophil, Testis, v6-5
907337	51	AGG ...	RTR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
909520	66	AAG ...	KKD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1247818	63	AAG ...	KDK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1248292	33	AGG ...	RPA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

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