Transcript 641259

Transcript

ID CARD

MetamORF ID

641259

ENSMUST00000133430

Name

Psme4-203

Strand

Biotype

processed_transcript

Start-end positions

30811537-30813729

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:103554

Aliases

AA409398,
AU041366, ENSMUSG00000040850, MGI:2143994,
mKIAA0077, NCBI:103554, OFF:Psme4,
Psme4, TEMO

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1126576	150	TTG ...	LVS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
1287026	30	ATC ...	IQT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1287533	90	ATC ...	IRQ ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1288993	96	TTG ...	LMR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1284148	99	AAG ...	KFG ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
653816	78	ATG ...	MVS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, R1E, v6-5
641258	120	TTG ...	LCN ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, v6-5
1291401	90	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
932930	57	ATT ...	IFY ...	Ribo-seq	ATT		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
1286146	168	ATT ...	IGV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1285890	30	ATT ...	IAW ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	ncRNA sORF	E14

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