Transcript 93837 | MetamORF

Transcript

ID CARD

MetamORF ID

93837

ENSMUST00000152184

Name

Psmd1-208

Strand

Biotype

processed_transcript

Start-end positions

86110817-86132800

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:70247

Aliases

2410026J11Rik,
ENSMUSG00000026229, MGI:1917497, NCBI:70247,
OFF:Psmd1, P112, Psmd1,
S1

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
99693	126	GTG ...	VVS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
381413	132	CTG ...	LGT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
997774	39	CTG ...	LAQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
779658	117	GTG ...	VRQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
1357373	69	CTG ...	LVL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
25734	54	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
19015	66	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
32566	60	TTG ...	LAY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
93836	168	GTG ...	VVI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
327687	111	CTG ...	LWL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
117245	36	CTG ...	LVQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
811026	69	ATG ...	MEL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1360760	63	CTG ...	LVS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
308387	117	TTG ...	LLS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
311376	105	TTG ...	LAS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
408408	174	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
138327	117	GTG ...	VNQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
405483	90	GTG ...	VRY ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
95561	99	CTG ...	LYS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1862704	48	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
126883	39	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
28390	123	GTG ...	VVG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain
356567	114	TTG ...	LSE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
793002	126	GTG ...	VNY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
773622	66	CTG ...	LGI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
321356	96	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain

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