Transcript 42251 | MetamORF

Transcript

ID CARD

MetamORF ID

42251

ENSMUST00000143200

Name

Psmd1-205

Strand

Biotype

processed_transcript

Start-end positions

86064387-86071660

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:70247

Aliases

2410026J11Rik,
ENSMUSG00000026229, MGI:1917497, NCBI:70247,
OFF:Psmd1, P112, Psmd1,
S1

Chr 1

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
147624	138	CTG ...	LTD ...	Ribo-seq	CTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
42250	90	GTG ...	VQG ...	Ribo-seq	GTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
134116	42	CTG ...	LDE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, R1E
1217564	54	ATT ...	IIS ...	Ribo-seq	ATT		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
415280	51	ATT ...	ISL ...	Ribo-seq	ATT		2	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12
1575478	72	ATC ...	ITS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	MEF
750603	207	CTG ...	LWR ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, Neutrophil, NSC, R1E, v6-5
111090	195	CTG ...	LTE ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
52663	102	GTG ...	VDR ...	Ribo-seq	GTG		18	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5

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