Transcript 212346

Transcript

ID CARD

MetamORF ID

212346

ENSMUST00000138512

Name

Psmc4-205

Strand

Biotype

retained_intron

Start-end positions

28041716-28047022

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:23996

Aliases

CIP21,
ENSMUSG00000030603, MGI:1346093, MIP224,
NCBI:23996, OFF:Psmc4, Psmc4

Chr 7

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
214907	42	GTG ...	VIK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Spleen_B_cell
226042	60	ATG ...	MWP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
229491	144	CTG ...	LRP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
212345	63	CTG ...	LSV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
532166	105	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
216192	75	CTG ...	LAK ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
1025750	81	TTG ...	LIF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
217785	48	CTG ...	LNQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell
535030	84	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
220555	57	GTG ...	VRT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
220756	57	CTG ...	LEL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Spleen_B_cell
215013	105	TTG ...	LAV ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Spleen_B_cell
212418	42	TTG ...	LSW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
215670	60	CTG ...	LLE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Spleen_B_cell
227623	129	CTG ...	LDR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
225800	102	GTG ...	VFR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Spleen_B_cell
226227	132	CTG ...	LGE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Spleen_B_cell
212468	159	GTG ...	VGS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Spleen_B_cell
219070	159	TTG ...	LDP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Spleen_B_cell
224643	162	GTG ...	VVG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Spleen_B_cell
219730	75	GTG ...	VEC ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell

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