Transcript 16346 | MetamORF

Transcript

ID CARD

MetamORF ID

16346

ENSMUST00000002171

Name

Psmc3-201

Strand

Biotype

protein_coding

Start-end positions

91054055-91066369

CDS Start-stop positions

91054248-91066099

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:19182

Aliases

ENSMUSG00000002102,
MGI:1098754, NCBI:19182, OFF:Psmc3,
Psmc3, TBP-1

Chr 2

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
412381	69	AAG ...	KAA ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
863245	30	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1502209	39	GTG ...	VKY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
729841	42	TTG ...	LPW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
45911	105	GTG ...	VKF ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, C2C12, MEF, Neutrophil
45694	126	CTG ...	LSR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, Neutrophil
99238	60	TTG ...	LGR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
813028	72	ATG ...	MKS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, Neutrophil, NSC, v6-5
16345	78	ATG ...	MPL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC, Skin_tumor, v6-5
1052746	48	ATG ...	MTS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
1164781	75	TTG ...	LEM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
412161	93	ACG ...	TGG ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, MEF
813994	174	GTG ...	VES ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, Neutrophil
1054108	51	CTG ...	LMT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
115614	39	TTG ...	LRT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
810828	129	CTG ...	LRW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, v6-5
809504	66	TTG ...	LSF ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Neutrophil, v6-5
16113	51	GTG ...	VKR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1369145	60	TTG ...	LQP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC
45134	60	CTG ...	LGS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF
495722	66	ATG ...	MTR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
46795	75	TTG ...	LRK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
1165395	69	ATG ...	MAP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
119200	72	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
863988	96	ATG ...	MSS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, v6-5
729427	66	ATG ...	MAL ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
743520	105	TTG ...	LSP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, v6-5
737095	48	GTG ...	VPT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1168241	51	ATG ...	MVP ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1052640	39	ATG ...	MEP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
498565	75	TTG ...	LTP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
51344	63	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
16353	72	TTG ...	LVP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, NSC, Skin_tumor, v6-5
49513	39	GTG ...	VTS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil

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