Transcript 1196 | MetamORF

Transcript

ID CARD

MetamORF ID

1196

ENSMUST00000130737

Name

Psmb2-202

Strand

Biotype

processed_transcript

Start-end positions

126677679-126687285

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:26445

Aliases

AU045357,
AW108089, C7-I, D4Wsu33e,
ENSMUSG00000028837, HC7-I, MGI:1347045,
NCBI:26445, OFF:Psmb2, Psmb2

Chr 4

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
58400	135	GTG ...	VKT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
57328	84	TTG ...	LYQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
59250	120	GTG ...	VLE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
1195	33	GTG ...	VQL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Skin_tumor, Testis
897938	45	ATC ...	IQK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	MEF
56291	153	CTG ...	LVR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, Testis
57428	123	CTG ...	LSV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
977345	168	ATC ...	IQK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	MEF
58622	108	CTG ...	LET ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Testis
58327	72	ATG ...	MNC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
58410	99	CTG ...	LYS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Testis
58964	129	GTG ...	VSL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Testis
56951	120	CTG ...	LQP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, Testis
58643	117	TTG ...	LER ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Testis
56537	99	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
58652	150	GTG ...	VRS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Spleen_B_cell, Testis
414323	246	AAG ...	KMF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
899349	216	ATC ...	IQG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
60620	156	GTG ...	VQL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Testis
59347	72	TTG ...	LAS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
510092	51	ATG ...	MSS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
57818	90	TTG ...	LQN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
147706	69	ATG ...	MCW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
827800	123	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
899622	63	AGG ...	RAQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
56727	141	GTG ...	VKK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Testis
59371	117	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
897413	222	ATT ...	IGI ...	Ribo-seq	ATT		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF

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